Mock Version: 1.3.4
Mock Version: 1.3.4
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'], chrootPath='/var/lib/mock/f29-python-12862731-937869/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fdfdc304e48>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/rdkit-2018.03.2-1.fc29.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'], chrootPath='/var/lib/mock/f29-python-12862731-937869/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fdfdc304e48>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.wtFzxh
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf rdkit-Release_2018_03_2
+ /usr/bin/mkdir -p rdkit-Release_2018_03_2
+ cd rdkit-Release_2018_03_2
+ /usr/bin/gzip -dc /builddir/build/SOURCES/Release_2018_03_2.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ mv rdkit-Release_2018_03_2 python2
+ pushd python2
~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
Patch #0 (rdkit-2015.03-use_cairo_backend_on_tests.patch):
+ echo 'Patch #0 (rdkit-2015.03-use_cairo_backend_on_tests.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file rdkit/Chem/Draw/UnitTestSimilarityMaps.py
Hunk #1 succeeded at 169 (offset 71 lines).
Patch #1 (rdkit-2018.03-do_not_install_sping.patch):
+ echo 'Patch #1 (rdkit-2018.03-do_not_install_sping.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 220 (offset 2 lines).
Hunk #2 succeeded at 228 (offset 2 lines).
Patch #2 (rdkit-2018.03-fix_cmake_files_path.patch):
+ echo 'Patch #2 (rdkit-2018.03-fix_cmake_files_path.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 132 (offset 5 lines).
Hunk #2 succeeded at 148 (offset 5 lines).
Patch #3 (rdkit-2018.03.2-fix_libraries_soname.patch):
+ echo 'Patch #3 (rdkit-2018.03.2-fix_libraries_soname.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file Code/cmake/Modules/RDKitUtils.cmake
+ rm -rf rdkit/sping
+ cp -pr license.txt ReleaseNotes.md ../
~/build/BUILD/rdkit-Release_2018_03_2
+ popd
+ cp -a python2 python3
+ find python3 -name '*.py'
+ xargs sed -i '1s|^#!.*|#!/usr/bin/python3|'
+ find python3 -name test_list.py
+ xargs sed -i 's/"python"/"python3"/g'
+ find python3 -name test_list.py
+ xargs sed -i 's/'\''python'\''/'\''python3'\''/g'
+ sed -i.orig s/python/python3/g python3/Projects/DbCLI/TestDbCLI.py
+ find python2 -name '*.py'
+ xargs sed -i '1s|^#!.*|#!/usr/bin/python2|'
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.rEwCYm
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_2
~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
+ export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed'
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed'
+ pushd python2
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ export LDFLAGS
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_PGSQL:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=OFF -D RDK_BUILD_COORDGEN_SUPPORT:BOOL=OFF -D RDK_BUILD_MOLINTERCHANGE_SUPPORT:BOOL=OFF -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=ON -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 .
-- The C compiler identification is GNU 8.1.1
-- The CXX compiler identification is GNU 8.1.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Found INCHI: /usr/lib64/libinchi.so  
-- Found PythonInterp: /usr/bin/python2 (found version "2.7.15") 
-- Found PythonLibs: /usr/lib64/libpython2.7.so (found version "2.7.15") 
-- Boost version: 1.66.0
-- Found the following Boost libraries:
--   python
Python Install directory /usr/lib64/python2.7/site-packages
PYTHON Py_ENABLE_SHARED: 1
PYTHON USING LINK LINE: -pthread -shared -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Boost version: 1.66.0
-- Found the following Boost libraries:
--   serialization
-- Found PostgreSQL: /usr/lib64/libpq.so (found version "10.4") 
== Using strict rotor definition
-- Found BISON: /usr/bin/bison  
-- Found FLEX: /usr/bin/flex  
== Updating Filters.cpp from pains file
== Done updating pains files
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.4.2") 
-- Checking for module 'cairo'
--   Found cairo, version 1.15.12
-- Found Cairo: /usr/include/cairo  
postgres: /usr/include;/usr/include/pgsql/server
=====================================================================
After building, check
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/pgsql_install.sh
for correctness of installation paths. If everything is OK, gain 
administrator privileges, stop the PostgreSQL service, run
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/pgsql_install.sh
to install the PostgreSQL RDKit cartridge, then start again
the PostgreSQL service
=====================================================================
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2
+ make -j6
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2018_03_2/python2 -B/builddir/build/BUILD/rdkit-Release_2018_03_2/python2 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/CMakeFiles /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/CoordGen /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/CoordGen /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/rdkit/Chem/inchi.py
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/Invariant.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures && /usr/bin/c++  -DChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/FreeChemicalFeature.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/types.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/utils.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/RDLog.cpp
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/usr/bin/cc -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKithc.so.1 -o ../../../../lib/libRDKithc.so.1.2018.03.2 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o 
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/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so
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/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2018.03.2 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/testRDValue.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/BitVect.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/EigenSolvers && /usr/bin/c++  -DEigenSolvers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDict.dir/testDict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/testDict.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/testMatrices.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/SparseBitVect.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Query && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testQuery.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Query/test.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMatrices.dir/testMatrices.cpp.o  -o testMatrices -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[  4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/ExplicitBitVect.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs/CatalogParams.cpp
[  5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs/CatalogEntry.cpp
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/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2018.03.2 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so
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[  9%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKithc.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  9%] Built target Clustering
[  9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/FPBReader.cpp
[  9%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKithc.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  9%] Built target SimDivPickers
[  9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/MultiFPBReader.cpp
[  9%] Linking CXX executable testChemicalFeatures
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o  -o testChemicalFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  9%] Built target testChemicalFeatures
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
Scanning dependencies of target testSimDivPickers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  9%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/testPickers.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/Wrap/RDBase.cpp:15:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[  9%] Linking CXX executable testSimDivPickers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o  -o testSimDivPickers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread ../../lib/libRDKithc.so.1.2018.03.2 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  9%] Built target testSimDivPickers
[ 10%] Linking CXX shared library ../../lib/libRDKitDataStructs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2018.03.2 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 10%] Built target DataStructs
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
Scanning dependencies of target testFPB
Scanning dependencies of target testDataStructs
Scanning dependencies of target testMultiFPB
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
Scanning dependencies of target RDGeometryLib
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
Scanning dependencies of target cDataStructs
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 11%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o
[ 11%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp
[ 11%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testFPB.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testMultiFPB.cpp
[ 11%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.cpp
[ 12%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/DataStructs.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp: In function 'int main()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp:1398:12: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
   } catch (IndexErrorException) {
            ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp: In instantiation of 'void Test(T) [with T = SparseBitVect]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp:1417:17:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp:118:5: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
   } catch (IndexErrorException) {
     ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp: In instantiation of 'void Test(T) [with T = ExplicitBitVect]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp:1423:19:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp:118:5: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
[ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Transform2D.cpp
[ 12%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/DiscreteValueVect.cpp
[ 13%] Linking CXX executable testFPB
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFPB.dir/testFPB.cpp.o  -o testFPB -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMetricMatrixCalc
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o  -o testMultiFPB -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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[ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Transform3D.cpp
[ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/UniformGrid3D.cpp
[ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/GridUtils.cpp
[ 13%] Linking CXX executable testDataStructs
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o  -o testDataStructs -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSimDivPickers
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Scanning dependencies of target InfoTheory
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory && /usr/bin/c++  -DInfoTheory_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/InfoBitRanker.cpp
[ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/SparseIntVect.cpp
[ 15%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 15%] Built target rdMetricMatrixCalc
[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/wrap_SparseBV.cpp
[ 16%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 16%] Built target RDGeometryLib
[ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp
[ 16%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 16%] Built target InfoTheory
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
Scanning dependencies of target GraphMol
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Atom.cpp
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
[ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o
[ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryAtom.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp
Scanning dependencies of target testTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 16%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/testTransforms.cpp
[ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryBond.cpp
[ 16%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../../lib/libRDKithc.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 16%] Built target rdSimDivPickers
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
Scanning dependencies of target testGrid
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 16%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/testGrid.cpp
[ 16%] Linking CXX executable testTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTransforms.dir/testTransforms.cpp.o  -o testTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 17%] Linking CXX shared module ../../../rdkit/rdBase.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 17%] Built target testTransforms
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
Scanning dependencies of target rdGeometry
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 18%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap/Point.cpp
[ 18%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap/UniformGrid3D.cpp
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[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Bond.cpp
[ 19%] Linking CXX executable testGrid
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testGrid.dir/testGrid.cpp.o  -o testGrid -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 19%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolOps.cpp
[ 19%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap/rdGeometry.cpp
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
[ 19%] Built target testGrid
[ 19%] Built target rdBase
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
Scanning dependencies of target Alignment
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 19%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o
Scanning dependencies of target rdInfoTheory
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment && /usr/bin/c++  -DAlignment_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/AlignPoints.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
Scanning dependencies of target Optimizer
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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[ 19%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp
[ 19%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer && /usr/bin/c++  -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer/BFGSOpt.cpp
[ 19%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 19%] Built target rdGeometry
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
Scanning dependencies of target cQuantize
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 19%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data/cQuantize.cpp
[ 19%] Linking CXX shared library ../../../lib/libRDKitAlignment.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2018.03.2 CMakeFiles/Alignment.dir/AlignPoints.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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[ 19%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp
[ 20%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp
[ 20%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 20%] Built target cQuantize
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
Scanning dependencies of target testAlignment
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 20%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/testAlignment.cpp
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
Scanning dependencies of target rdAlignment
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 20%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp
[ 20%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 20%] Linking CXX executable testAlignment
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1
[ 20%] Built target rdInfoTheory
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testAlignment.dir/testAlignment.cpp.o  -o testAlignment -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 20%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o
[ 20%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FindRings.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer && /usr/bin/c++  -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer/LinearSearch.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ROMol.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/wrap_BitOps.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 20%] Built target testAlignment
[ 21%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/wrap_FPB.cpp
[ 21%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2018.03.2 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 21%] Built target Optimizer
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RWMol.cpp
[ 21%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/wrap_Utils.cpp
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target ForceField
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/ForceField.cpp
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o  -o testOptimizer -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/AngleBend.cpp
[ 21%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/BondStretch.cpp
[ 21%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 21%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/Nonbonded.cpp
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[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o
[ 22%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/atomic_data.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/Inversion.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolPickler.cpp
[ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/TorsionAngle.cpp
[ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/DistanceConstraint.cpp
[ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o
[ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Canon.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/AngleConstraint.cpp
[ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/TorsionConstraint.cpp
[ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/AtomIterators.cpp
[ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/PositionConstraint.cpp
[ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/BondIterators.cpp
[ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/Params.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/AngleBend.cpp
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Aromaticity.cpp
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Kekulize.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/BondStretch.cpp
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDiscriminators.cpp
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ConjugHybrid.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/OopBend.cpp
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/StretchBend.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/AddHs.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/TorsionAngle.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Matrices.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/AddHs.cpp: In function 'bool RDKit::MolOps::{anonymous}::adjustStereoAtomsIfRequired(RDKit::RWMol&, const RDKit::Atom*, const RDKit::Atom*)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/AddHs.cpp:497:9: warning: unused variable 'dblBond' [-Wunused-variable]
   Bond *dblBond = nullptr;
         ^~~~~~~
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Chirality.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/AngleConstraint.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/DistanceConstraint.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/Nonbonded.cpp
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RingInfo.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Chirality.cpp: In function 'bool RDKit::MolOps::{anonymous}::isBondCandidateForStereo(const RDKit::Bond*, const RDKit::ROMol&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Chirality.cpp:1737:62: warning: unused parameter 'mol' [-Wunused-parameter]
 bool isBondCandidateForStereo(const Bond *bond, const ROMol &mol) {
                                                 ~~~~~~~~~~~~~^~~
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/TorsionConstraint.cpp
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Conformer.cpp
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/PositionConstraint.cpp
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/Params.cpp
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Renumber.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/Params.cpp: In constructor 'ForceFields::MMFF::MMFFAromCollection::MMFFAromCollection(const uint8_t*)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/Params.cpp:50:49: warning: division 'sizeof (const uint8_t* {aka const unsigned char*}) / sizeof (const uint8_t {aka const unsigned char})' does not compute the number of array elements [-Wsizeof-pointer-div]
   for (unsigned int i = 0; i < sizeof(mmffArom) / sizeof(mmffArom[0]); ++i) {
                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/Params.cpp:46:62: note: first 'sizeof' operand was declared here
 MMFFAromCollection::MMFFAromCollection(const boost::uint8_t *mmffArom) {
                                        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/AdjustQuery.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Resonance.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/new_canon.cpp
[ 29%] Linking CXX shared library ../../lib/libRDKitForceField.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2018.03.2 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 29%] Built target ForceField
[ 29%] Linking CXX shared library ../../lib/libRDKitGraphMol.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2018.03.2 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 29%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
[ 29%] [FLEX][SmartsL] Building scanner with flex 2.6.1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmarts_ -o/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp smarts.ll
Scanning dependencies of target MolTransforms
Scanning dependencies of target PartialCharges
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
Scanning dependencies of target SubstructMatch
Scanning dependencies of target Subgraphs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
Scanning dependencies of target MolCatalog
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 29%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o
[ 30%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/Subgraphs.cpp
[ 30%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o
[ 30%] [BISON][SmilesY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/SubstructMatch.cpp
[ 30%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/smiles.tab.cpp smiles.yy
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms && /usr/bin/c++  -DMolTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/MolTransforms.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges && /usr/bin/c++  -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp
[ 30%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog && /usr/bin/c++  -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp
[ 30%] [BISON][SmartsY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -pyysmarts_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/smarts.tab.cpp smarts.yy
smarts.yy: warning: 108 shift/reduce conflicts [-Wconflicts-sr]
[ 31%] [FLEX][SmilesL] Building scanner with flex 2.6.1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmiles_ -o/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp smiles.ll
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SmilesParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/SmilesParse.cpp
[ 32%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges && /usr/bin/c++  -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/GasteigerParams.cpp
[ 33%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog && /usr/bin/c++  -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp
[ 33%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so
[ 34%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 34%] Built target MolTransforms
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
Scanning dependencies of target Trajectory
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory/Trajectory.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so
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[ 34%] Built target MolCatalog
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] [FLEX][SlnL] Building scanner with flex 2.6.1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/flex -Pyysln_ -o/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/lex.yysln.cpp sln.ll
[ 34%] [BISON][SlnY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/bison -pyysln_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/sln.tab.cpp sln.yy
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SLNParse
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/SLNParse.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Built target PartialCharges
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
Scanning dependencies of target rdqueries
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/rdqueries.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2018.03.2 CMakeFiles/Trajectory.dir/Trajectory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Built target Trajectory
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
[ 34%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/SubstructUtils.cpp
Scanning dependencies of target rdPartialCharges
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Built target SubstructMatch
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
[ 34%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Queries.cpp
[ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp
Scanning dependencies of target rdMolTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp
[ 34%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/SLNAttribs.cpp
[ 34%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Built target rdPartialCharges
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target ShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp
[ 34%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryAtom.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RDKitQueries.h:20,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Queries.cpp:15:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = double]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:820:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = bool]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = int]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = double]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:820:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = bool]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = int]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
[ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/SmilesWrite.cpp
[ 35%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/sln.tab.cpp
[ 35%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 35%] Built target ShapeHelpers
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
Scanning dependencies of target rdtrajectory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
sln.yy:54: warning: "YYDEBUG" redefined
 #define YYDEBUG 1
 
In file included from sln.yy:50:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/sln.tab.hpp:37: note: this is the location of the previous definition
 # define YYDEBUG 0
 
[ 36%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Trajectory.cpp
[ 37%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 37%] Built target rdMolTransforms
[ 37%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/lex.yysln.cpp
sln.yy: In function 'void yysln_error(const char*, std::vector<RDKit::RWMol*>*, bool, void*, const char*)':
sln.yy:58:43: warning: unused parameter 'ms' [-Wunused-parameter]
              std::vector<RDKit::RWMol *> *ms,bool doQ,
              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
sln.yy:58:51: warning: unused parameter 'doQ' [-Wunused-parameter]
              std::vector<RDKit::RWMol *> *ms,bool doQ,
                                              ~~~~~^~~
sln.yy:59:13: warning: unused parameter 'scanner' [-Wunused-parameter]
       void *scanner,const char * msg )
       ~~~~~~^~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'yy_buffer_state* yysln__scan_bytes(const char*, int, yyscan_t)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2543:17: warning: comparison of integer expressions of different signedness: 'yy_size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  for ( i = 0; i < _yybytes_len; ++i )
               ~~^~~~~~~~~~~~~~
[ 37%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 37%] Built target rdqueries
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
Scanning dependencies of target Depictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 37%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/RDDepictor.cpp
[ 38%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/SmartsWrite.cpp
[ 38%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o
[ 38%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/EmbeddedFrag.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp
[ 38%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2018.03.2 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/RDDepictor.cpp: In function 'unsigned int RDDepict::compute2DCoords(RDKit::ROMol&, const INT_POINT2D_MAP*, bool, bool, unsigned int, unsigned int, int, bool, bool)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/RDDepictor.cpp:310:58: warning: unused parameter 'forceRDKit' [-Wunused-parameter]
                              bool permuteDeg4Nodes, bool forceRDKit) {
                                                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/RDDepictor.cpp: In function 'unsigned int RDDepict::compute2DCoordsMimicDistMat(RDKit::ROMol&, const DOUBLE_SMART_PTR*, bool, bool, double, unsigned int, unsigned int, int, bool, bool)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/RDDepictor.cpp:421:10: warning: unused parameter 'forceRDKit' [-Wunused-parameter]
     bool forceRDKit) {
     ~~~~~^~~~~~~~~~
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
[ 38%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o
[ 38%] Built target SLNParse
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/rdTrajectory.cpp
[ 38%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o
Scanning dependencies of target MolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 38%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign && /usr/bin/c++  -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/AlignMolecules.cpp
[ 38%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/smiles.tab.cpp
[ 39%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 39%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 39%] Built target rdChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
[ 39%] Built target rdtrajectory
Scanning dependencies of target rdShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
[ 39%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign && /usr/bin/c++  -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 39%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp
[ 39%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/DepictUtils.cpp
[ 39%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/smarts.tab.cpp
smiles.yy: In function 'void yysmiles_error(const char*, std::vector<RDKit::RWMol*>*, std::__cxx11::list<unsigned int>*, void*, const char*)':
smiles.yy:38:29: warning: unused parameter 'input' [-Wunused-parameter]
 yysmiles_error( const char *input,
                 ~~~~~~~~~~~~^~~~~
smiles.yy:40:42: warning: unused parameter 'branchPoints' [-Wunused-parameter]
                 std::list<unsigned int> *branchPoints,
                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
smiles.yy:41:9: warning: unused parameter 'scanner' [-Wunused-parameter]
   void *scanner,const char * msg )
   ~~~~~~^~~~~~~
smarts.yy: In function 'void yysmarts_error(const char*, std::vector<RDKit::RWMol*>*, void*, const char*)':
smarts.yy:24:29: warning: unused parameter 'input' [-Wunused-parameter]
 yysmarts_error( const char *input,
                 ~~~~~~~~~~~~^~~~~
smarts.yy:25:46: warning: unused parameter 'ms' [-Wunused-parameter]
                 std::vector<RDKit::RWMol *> *ms,
                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
smarts.yy:26:9: warning: unused parameter 'scanner' [-Wunused-parameter]
   void *scanner,const char * msg )
   ~~~~~~^~~~~~~
[ 39%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp
[ 39%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp: In function 'yy_buffer_state* yysmarts__scan_bytes(const char*, int, yyscan_t)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2477:17: warning: comparison of integer expressions of different signedness: 'yy_size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  for ( i = 0; i < _yybytes_len; ++i )
               ~~^~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function 'yy_buffer_state* yysmiles__scan_bytes(const char*, int, yyscan_t)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2762:17: warning: comparison of integer expressions of different signedness: 'yy_size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  for ( i = 0; i < _yybytes_len; ++i )
               ~~^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Conformer.h:13,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ROMol.h:36,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h: In function 'boost::python::tuple RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                     ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                                 ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                     ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                                 ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                     ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                                 ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                     ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                                 ~~~~~~^
[ 39%] Linking CXX shared library ../../../lib/libRDKitDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2018.03.2 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 39%] Built target Depictor
[ 39%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 39%] Built target rdShapeHelpers
[ 39%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2018.03.2 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 39%] Built target MolAlign
[ 40%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 40%] Built target SmilesParse
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMemTest1
Scanning dependencies of target graphmoltestCanon
Scanning dependencies of target RDInchiLib
Scanning dependencies of target test-valgrind
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
Scanning dependencies of target ForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
[ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o
[ 41%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 41%] Building CXX object External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o
[ 41%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testCanon.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDInchiLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/inchi.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/memtest1.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/test-valgrind.cpp
Scanning dependencies of target FileParsers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
[ 41%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/Mol2FileParser.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testCanon.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testCanon.cpp:180:18: warning: catching polymorphic type 'class RDKit::MolSanitizeException' by value [-Wcatch-value=]
         } catch (MolSanitizeException) {
                  ^~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp
[ 42%] Linking CXX executable test-valgrind
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o  -o test-valgrind -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 42%] Built target test-valgrind
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolqueryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 42%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/querytest.cpp
[ 42%] Linking CXX executable graphmolMemTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o  -o graphmolMemTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 42%] Linking CXX executable graphmoltestCanon
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o  -o graphmoltestCanon -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolIterTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 43%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/itertest.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 43%] Built target graphmoltestCanon
[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileParser.cpp
[ 43%] Linking CXX shared library ../../lib/libRDKitRDInchiLib.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDInchiLib.so.1 -o ../../lib/libRDKitRDInchiLib.so.1.2018.03.2 CMakeFiles/RDInchiLib.dir/inchi.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: -linchi ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDInchiLib.so.1.2018.03.2 ../../lib/libRDKitRDInchiLib.so.1 ../../lib/libRDKitRDInchiLib.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
[ 43%] Built target RDInchiLib
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolcpTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 43%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o
Scanning dependencies of target ChemTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/cptest.cpp
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/ChemTransforms.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryAtom.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RDKitQueries.h:20,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/querytest.cpp:13:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = double]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = double]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:820:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = int]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:820:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = int]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileParser.cpp: In function 'RDKit::Bond* RDKit::{anonymous}::ParseMolFileBondLine(const string&, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileParser.cpp:1408:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
     } catch (boost::bad_lexical_cast) {
                     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileParser.cpp:1436:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
     } catch (boost::bad_lexical_cast) {
                     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileParser.cpp:1444:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
     } catch (boost::bad_lexical_cast) {
                     ^~~~~~~~~~~~~~~~
[ 44%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp
[ 44%] Linking CXX executable graphmolIterTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolIterTest.dir/itertest.cpp.o  -o graphmolIterTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smaTest1
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[ 44%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/smatest.cpp
[ 44%] Linking CXX executable graphmolcpTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolcpTest.dir/cptest.cpp.o  -o graphmolcpTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Built target graphmolcpTest
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
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[ 45%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Filters.cpp
[ 45%] Linking CXX executable graphmolqueryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o  -o graphmolqueryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
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[ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/Fingerprints.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp: In member function 'void RDKit::MMFF::MMFFMolProperties::setMMFFHydrogenType(const RDKit::Atom*)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:2343:13: warning: this statement may fall through [-Wimplicit-fallthrough=]
             if (isHOS) {
             ^~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:2350:11: note: here
           default:
           ^~~~~~~
[ 46%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/FilterCatalog.cpp
[ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/PatternFingerprints.cpp
[ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/MorganFingerprints.cpp
[ 47%] Linking CXX executable smaTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smaTest1.dir/smatest.cpp.o  -o smaTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 47%] Built target smaTest1
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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Scanning dependencies of target testSubgraphs1
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 47%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/test1.cpp
[ 47%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp
[ 47%] Linking CXX executable testSubgraphs1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubgraphs1.dir/test1.cpp.o  -o testSubgraphs1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 47%] Built target testSubgraphs1
[ 47%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o
[ 47%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp
[ 47%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/AtomPairs.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp: In function 'void RDKit::MolFragmenter::{anonymous}::checkChiralityPostMove(const RDKit::ROMol&, const RDKit::Atom*, RDKit::Atom*, const RDKit::Bond*)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp:367:16: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
       if (bidx != bond->getIdx()) {
           ~~~~~^~~~~~~~~~~~~~~~~
[ 47%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o
[ 47%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp
[ 47%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp
[ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o
[ 48%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/MACCS.cpp
[ 48%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
[ 48%] Built target ChemTransforms
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubgraphs2
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
Scanning dependencies of target FragCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 48%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/test2.cpp
[ 48%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp
[ 48%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 48%] Built target FilterCatalog
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target testPartialCharges
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make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 49%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/test1.cpp
[ 49%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so
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[ 49%] Built target ForceFieldHelpers
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target MolChemicalFeatures
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 49%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
[ 50%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2018.03.2 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target ReducedGraphs
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 50%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp
[ 50%] Linking CXX executable testPartialCharges
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testPartialCharges.dir/test1.cpp.o  -o testPartialCharges -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 50%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
[ 50%] Linking CXX executable testSubgraphs2
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubgraphs2.dir/test2.cpp.o  -o testSubgraphs2 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 50%] Built target testSubgraphs2
[ 50%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
[ 50%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp
Scanning dependencies of target SubstructLibrary
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 50%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp
[ 50%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp
[ 51%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 51%] Built target ReducedGraphs
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target testSLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 51%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/test.cpp
[ 51%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 51%] Built target SubstructLibrary
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 51%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp
[ 51%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 51%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
[ 52%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp
Scanning dependencies of target rdchem
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 52%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/rdchem.cpp
[ 52%] Linking CXX executable testSLNParse
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSLNParse.dir/test.cpp.o  -o testSLNParse -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 52%] Built target testSLNParse
[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o
[ 52%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileStereochem.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Table.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Table.cpp
[ 52%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 52%] Built target MolChemicalFeatures
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
Scanning dependencies of target rdinchi
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 52%] Building CXX object External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdinchi_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdinchi.dir/pyInchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap/pyInchi.cpp
[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileWriter.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileWriter.cpp: In function 'std::__cxx11::string RDKit::MolToMolBlock(const RDKit::ROMol&, bool, int, bool, bool)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileWriter.cpp:1196:12: warning: catching polymorphic type 'class RDKit::{anonymous}::RequiresV3000Exception' by value [-Wcatch-value=]
   } catch (RequiresV3000Exception) {
            ^~~~~~~~~~~~~~~~~~~~~~
[ 53%] Linking CXX shared module ../../../rdkit/Chem/rdinchi.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdinchi.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
[ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o
[ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Atom.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Bond.cpp
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[ 55%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/DistGeomUtils.cpp
[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp
[ 55%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/TriangleSmooth.cpp
[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/SDMolSupplier.cpp
[ 55%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/DistViolationContrib.cpp
[ 55%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/ChiralViolationContrib.cpp
[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/SDWriter.cpp
[ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Mol.cpp
[ 55%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2018.03.2 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so
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[ 55%] Built target DistGeometry
[ 55%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
[ 56%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/FragCatParams.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Conformer.cpp
[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/RingInfo.cpp
[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
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[ 56%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap/ForceField.cpp
[ 56%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
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[ 56%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/testDistGeom.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o  -o testDistGeom -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
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[ 57%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap && /usr/bin/c++  -DDistGeom_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap/DistGeom.cpp
[ 57%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 58%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o
[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o
[ 58%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/SmilesWriter.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/EditableMol.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/MonomerInfo.cpp
[ 58%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp
[ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TDTMolSupplier.cpp
[ 59%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 59%] Built target rdForceField
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RDKitBase.h:20,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/EditableMol.cpp:22:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/EditableMol.cpp: In destructor 'RDKit::{anonymous}::EditableMol::~EditableMol()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/Invariant.h:112:11: warning: throw will always call terminate() [-Wterminate]
     throw inv;                                                             \
           ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/Invariant.h:112:11: note: in definition of macro 'PRECONDITION'
     throw inv;                                                             \
           ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/Invariant.h:112:11: note: in C++11 destructors default to noexcept
     throw inv;                                                             \
           ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/Invariant.h:112:11: note: in definition of macro 'PRECONDITION'
     throw inv;                                                             \
           ^~~
[ 59%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 59%] Built target rdForceFieldHelpers
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 59%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
[ 60%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
[ 60%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
[ 60%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp
[ 60%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 60%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target testReducedGraphs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 60%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/test1.cpp
[ 60%] Linking CXX executable testReducedGraphs
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReducedGraphs.dir/test1.cpp.o  -o testReducedGraphs -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 60%] Built target testReducedGraphs
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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[ 60%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp
[ 61%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 61%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/MolBundle.cpp
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TplFileParser.cpp
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TplFileWriter.cpp
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBParser.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TDTWriter.cpp
Scanning dependencies of target DistGeomHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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[ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/types.h:26,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolWriters.h:14,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TDTWriter.cpp:16:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TDTWriter.cpp: In destructor 'virtual RDKit::TDTWriter::~TDTWriter()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/Invariant.h:104:11: warning: throw will always call terminate() [-Wterminate]
     throw inv;                                                         \
           ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT'
     CHECK_INVARIANT(dp_ostream,
     ^~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/Invariant.h:104:11: note: in C++11 destructors default to noexcept
     throw inv;                                                         \
           ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT'
     CHECK_INVARIANT(dp_ostream,
     ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBParser.cpp:24:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
 static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
                     ^~~~~~~~~~~~
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBWriter.cpp
[ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Embedder.cpp
[ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBSupplier.cpp
[ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/ProximityBonds.cpp
[ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/SequenceParsers.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBWriter.cpp: In function 'std::__cxx11::string RDKit::GetPDBBondLines(const RDKit::Atom*, bool, bool, bool, unsigned int&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBWriter.cpp:163:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
         v.push_back(dst);
         ~~~~~~~~~~~^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBWriter.cpp:164:7: note: here
       case Bond::TRIPLE:
       ^~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBWriter.cpp:165:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
         v.push_back(dst);
         ~~~~~~~~~~~^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBWriter.cpp:166:7: note: here
       case Bond::DOUBLE:
       ^~~~
[ 62%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/ProximityBonds.cpp:10:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
 static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
                     ^~~~~~~~~~~~
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/SequenceWriters.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2018.03.2 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolTest1
Scanning dependencies of target graphmoltestChirality
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[ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/testMMFFForceField.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/testUFFForceField.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testChirality.cpp
[ 65%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o
[ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/molopstest.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Crippen.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Crippen.cpp: In constructor 'RDKit::Descriptors::CrippenParamCollection::CrippenParamCollection(const string&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Crippen.cpp:171:25: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
         } catch (boost::bad_lexical_cast) {
                         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/molopstest.cpp: In function 'void testRenumberAtoms()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/molopstest.cpp:4693:12: warning: unused variable 'nm' [-Wunused-variable]
     ROMol *nm = MolOps::renumberAtoms(*m, nVect);
            ^~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/molopstest.cpp: In function 'void testGithub1281()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/molopstest.cpp:6940:16: warning: unused variable 'm' [-Wunused-variable]
         RWMol *m = SmilesToMol(smiles);
                ^
[ 65%] Linking CXX executable testUFFForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o  -o testUFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Built target testUFFForceField
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPickler
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testPickler.cpp
[ 65%] Linking CXX executable testMMFFForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o  -o testMMFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Built target testMMFFForceField
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/MolDescriptors.cpp
Scanning dependencies of target molBundleTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testMolBundle.cpp
[ 66%] Linking CXX executable graphmolTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolTest1.dir/test1.cpp.o  -o graphmolTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
Scanning dependencies of target resMolSupplierTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/resMolSupplierTest.cpp
[ 66%] Linking CXX executable molBundleTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o  -o molBundleTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/MolSurf.cpp
Scanning dependencies of target graphmoltestPicklerGlobalSetting
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testPicklerGlobalSettings.cpp
[ 66%] Linking CXX executable graphmoltestChirality
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o  -o graphmoltestChirality -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
Scanning dependencies of target hanoiTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/hanoitest.cpp
[ 66%] Linking CXX executable resMolSupplierTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o  -o resMolSupplierTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target resMolSupplierTest
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target testDepictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/testDepictor.cpp
[ 67%] Linking CXX executable graphmoltestPickler
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o  -o graphmoltestPickler -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target graphmoltestPickler
[ 67%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Lipinski.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testPicklerGlobalSettings.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testPicklerGlobalSettings.cpp:256:14: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
          ~~~~^~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testPicklerGlobalSettings.cpp:256:26: warning: unused parameter 'argv' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
                    ~~~~~~^~~~~~
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDepictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp
[ 67%] Linking CXX executable graphmoltestPicklerGlobalSetting
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o  -o graphmoltestPicklerGlobalSetting -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smiTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/smiTest1.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/test.cpp
[ 67%] Linking CXX executable testDepictor
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDepictor.dir/testDepictor.cpp.o  -o testDepictor -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target testDepictor
[ 67%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
Scanning dependencies of target cxsmilesTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/cxsmiles_test.cpp
[ 67%] Linking CXX executable hanoiTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/hanoiTest.dir/hanoitest.cpp.o  -o hanoiTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target hanoiTest
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
Scanning dependencies of target testSequence
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/testSequence.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: In function 'void RDDepict::setPreferCoordGen(bool)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:131:29: warning: unused parameter 'value' [-Wunused-parameter]
 void setPreferCoordGen(bool value) {
                        ~~~~~^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/test.cpp: In function 'void testFail()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/test.cpp:167:14: warning: catching polymorphic type 'class RDKit::MolSanitizeException' by value [-Wcatch-value=]
     } catch (MolSanitizeException) {
              ^~~~~~~~~~~~~~~~~~~~
[ 68%] Linking CXX executable testSequence
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSequence.dir/testSequence.cpp.o  -o testSequence -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 68%] Built target testSequence
[ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/MQN.cpp
[ 68%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target fileParsersTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/test1.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 68%] Built target rdDepictor
[ 69%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Property.cpp
[ 70%] Linking CXX executable cxsmilesTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o  -o cxsmilesTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 70%] Built target cxsmilesTest
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolSupplier
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/testMolSupplier.cpp
[ 70%] Linking CXX executable graphmolMolOpsTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o  -o graphmolMolOpsTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 70%] Built target graphmolMolOpsTest
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolWriter
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/testMolWriter.cpp
[ 71%] Linking CXX executable testMolSupplier
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o  -o testMolSupplier -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
[ 71%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o
[ 71%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp
Scanning dependencies of target testTplParser
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/testTpls.cpp
[ 71%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp
[ 71%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/USRDescriptor.cpp
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
Scanning dependencies of target testMol2ToMol
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/testMol2ToMol.cpp
[ 71%] Linking CXX executable smiTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smiTest1.dir/test.cpp.o  -o smiTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Built target smiTest1
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubstructMatch
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 72%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/test1.cpp
[ 72%] Linking CXX executable testTplParser
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTplParser.dir/testTpls.cpp.o  -o testTplParser -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 72%] Built target testTplParser
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testChemTransforms
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 73%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/testChemTransforms.cpp
[ 73%] Linking CXX executable testMolWriter
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o  -o testMolWriter -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 73%] Built target testMolWriter
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
Scanning dependencies of target filterCatalogTest
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 73%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp
[ 74%] Linking CXX executable testMol2ToMol
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o  -o testMol2ToMol -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 74%] Built target testMol2ToMol
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfiltercatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 74%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp
[ 74%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2018.03.2 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 74%] Built target Descriptors
[ 74%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testFragCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/test1.cpp
[ 75%] Linking CXX executable filterCatalogTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o  -o filterCatalogTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Built target filterCatalogTest
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfragcatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp
[ 75%] Linking CXX executable testSubstructMatch
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubstructMatch.dir/test1.cpp.o  -o testSubstructMatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Built target testSubstructMatch
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target testDescriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/test.cpp
[ 75%] Linking CXX executable fileParsersTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/fileParsersTest1.dir/test1.cpp.o  -o fileParsersTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Built target fileParsersTest1
[ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
Scanning dependencies of target testAUTOCORR2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp
[ 75%] Linking CXX executable testChemTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o  -o testChemTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Built target testChemTransforms
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDescriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/test.cpp: In function 'void testProperties()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/test.cpp:1912:14: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
     } catch (KeyErrorException) {
              ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/test.cpp: In function 'void testStereoCounting()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/test.cpp:1960:12: warning: catching polymorphic type 'class ValueErrorException' by value [-Wcatch-value=]
   } catch (ValueErrorException) {
            ^~~~~~~~~~~~~~~~~~~
[ 75%] Linking CXX executable testFragCatalog
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFragCatalog.dir/test1.cpp.o  -o testFragCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Built target testFragCatalog
[ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:14: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
          ~~~~^~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:26: warning: unused parameter 'argv' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
                    ~~~~~~^~~~~~
[ 75%] Linking CXX executable testAUTOCORR2D
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o  -o testAUTOCORR2D -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Built target testAUTOCORR2D
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testFingerprints
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/test1.cpp
[ 76%] Linking CXX executable testDescriptors
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDescriptors.dir/test.cpp.o  -o testDescriptors -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 76%] Built target testDescriptors
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
[ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp
[ 77%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp
Scanning dependencies of target testMolTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 77%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/test1.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Conformer.h:13,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ROMol.h:36,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/GraphMol.h:18,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
     x = other.x;
         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:85:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
     y = other.y;
         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:86:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
     z = other.z;
         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributions(boost::python::api::object, boost::python::api::object)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
     x = other.x;
         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:85:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
     y = other.y;
         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:86:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
     z = other.z;
         ~~~~~~^
[ 77%] Linking CXX executable testMolTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolTransforms.dir/test1.cpp.o  -o testMolTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 77%] Built target testMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 77%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 77%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp
[ 77%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 78%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Built target rdfragcatalog
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testCrystalForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Built target rdfiltercatalog
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeomHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp
[ 78%] Linking CXX executable testFingerprints
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFingerprints.dir/test1.cpp.o  -o testFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Built target testFingerprints
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDistGeom
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++  -DBOOST_PYTHON_MAX_ARITY=32 -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
[ 78%] Linking CXX executable testCrystalForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o  -o testCrystalForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Built target testCrystalForceField
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/testMolAlign.cpp
[ 78%] Linking CXX executable testMMFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o  -o testMMFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp
[ 78%] Linking CXX executable testUFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o  -o testUFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target testFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp
[ 79%] Linking CXX executable testDistGeomHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o  -o testDistGeomHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Built target testDistGeomHelpers
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp
[ 79%] Linking CXX executable testMolAlign
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o  -o testMolAlign -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Built target testMolAlign
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/test1.cpp
[ 80%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Built target rdMolDescriptors
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp
[ 80%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Built target rdDistGeom
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCS
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/FMCS.cpp
[ 80%] Linking CXX executable testFeatures
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFeatures.dir/testFeatures.cpp.o  -o testFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Built target testFeatures
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target MolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash && /usr/bin/c++  -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/MolHash.cpp
[ 80%] Linking CXX executable testShapeHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o  -o testShapeHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Built target testShapeHelpers
[ 80%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Seed.cpp
[ 80%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Built target rdMolAlign
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target MMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA && /usr/bin/c++  -DMMPA_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/MMPA.cpp
[ 81%] Linking CXX executable testMolCatalog
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolCatalog.dir/test1.cpp.o  -o testMolCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target testMolCatalog
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target StructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructChecker.cpp
[ 81%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash && /usr/bin/c++  -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/HashToString.cpp
[ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp
[ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target rdMolCatalog
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
[ 81%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
[ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructureFlags.cpp
Scanning dependencies of target trajectoryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory/trajectoryTest.cpp
[ 81%] Linking CXX shared library ../../../lib/libRDKitMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2018.03.2 CMakeFiles/MMPA.dir/MMPA.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target MMPA
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
[ 81%] Linking CXX shared library ../../../lib/libRDKitMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1
Scanning dependencies of target substructLibraryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2018.03.2 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target MolHash
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSubstructLibrary
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 82%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::parseOptionsJSON(const string&, RDKit::StructureCheck::StructCheckerOptions&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:33:19: warning: unused variable 'iss' [-Wunused-variable]
     std::istream &iss = ss;
                   ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector<std::pair<RDKit::StructureCheck::AugmentedAtom, RDKit::StructureCheck::AugmentedAtom> >&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:356:12: warning: unused variable 'k' [-Wunused-variable]
   unsigned k = fscanf(fp, "%d", &n);
            ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::loadChargeDataTables(const string&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:665:46: warning: unused parameter 'path' [-Wunused-parameter]
 bool loadChargeDataTables(const std::string &path) {
                           ~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:248:14: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
          ~~~~^~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:248:26: warning: unused parameter 'argv' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
                    ~~~~~~^~~~~~
[ 82%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp
[ 83%] Linking CXX executable trajectoryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o  -o trajectoryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 83%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o
[ 84%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Pattern.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Utilites.cpp
[ 84%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Stereo.cpp
[ 84%] Linking CXX executable substructLibraryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o  -o substructLibraryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 84%] Built target substructLibraryTest
[ 84%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::Atom3Parity(RDKit::StructureCheck::stereo_bond_t*)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Stereo.cpp:371:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else]
     if (ligands[i].direction != RDKit::Bond::NONE)
        ^
[ 84%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp
[ 84%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o
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make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolfiles
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[ 84%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/rdmolfiles.cpp
[ 84%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/ReCharge.cpp
[ 84%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'bool RDKit::StructureCheck::ChargeFix::setpKaValues()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/ReCharge.cpp:166:24: warning: variable 'AAp' set but not used [-Wunused-but-set-variable]
   const AugmentedAtom *AAp;
                        ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'int RDKit::StructureCheck::ChargeFix::markMostAcidicAtoms(double&, double&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/ReCharge.cpp:405:17: warning: unused variable 'atom' [-Wunused-variable]
     const Atom &atom = *Mol.getAtomWithIdx(i);
                 ^~~~
[ 84%] Linking CXX shared library ../../../lib/libRDKitFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2018.03.2 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 84%] Built target FMCS
[ 84%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Tautomer.cpp
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
Scanning dependencies of target testInchi
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 84%] Building CXX object External/INCHI-API/CMakeFiles/testInchi.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testInchi.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/test.cpp
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemReactions
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 84%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Reaction.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Tautomer.cpp: In member function 'bool RDKit::StructureCheck::StructCheckTautomer::applyTautomer(unsigned int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Tautomer.cpp:61:12: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
     if (-1 == ti || -1 == tj) continue;
         ~~~^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Tautomer.cpp:61:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
     if (-1 == ti || -1 == tj) continue;
                     ~~~^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Tautomer.cpp:36:18: warning: unused variable 'ntb' [-Wunused-variable]
   const unsigned ntb = toTautomer.getNumBonds();
                  ^~~
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp:23:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 84%] Built target rdSubstructLibrary
[ 84%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/SDMolSupplier.cpp
[ 85%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2018.03.2 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 85%] Built target StructChecker
[ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/MDLParser.cpp
[ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/DaylightParser.cpp
[ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/ReactionPickler.cpp
[ 85%] Linking CXX executable testInchi
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/testInchi.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testInchi.dir/test.cpp.o  -o testInchi -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib -linchi ../../lib/libRDKitRDInchiLib.so.1.2018.03.2 -linchi ../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/TDTMolSupplier.cpp
[ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o
[ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/SmilesMolSupplier.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/ReactionWriter.cpp
[ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/ReactionDepict.cpp
[ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/SmilesWriter.cpp
[ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/SDWriter.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/SmilesWriter.cpp:20:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
[ 87%] Built target testInchi
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target testFMCS
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
Scanning dependencies of target rdFMCS
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make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
[ 87%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/testFMCS_Unit.cpp
[ 88%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/SDWriter.cpp:21:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/TDTWriter.cpp
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCStest
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 89%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test/testFMCS.cpp
[ 89%] Linking CXX executable testFMCS
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o  -o testFMCS -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 89%] Built target testFMCS
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 89%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/testMolHash.cpp
[ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/PDBWriter.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/TDTWriter.cpp:21:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 89%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 89%] Linking CXX executable FMCStest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/FMCStest.dir/testFMCS.cpp.o  -o FMCStest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/PDBWriter.cpp:20:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
[ 89%] Built target FMCStest
[ 89%] Built target rdFMCS
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
Scanning dependencies of target testMMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
Scanning dependencies of target rdMMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
[ 89%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 89%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/MMPA_UnitTest.cpp
[ 89%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp
[ 90%] Linking CXX executable testMolHash
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolHash.dir/testMolHash.cpp.o  -o testMolHash -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 90%] Built target testMolHash
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target testStructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 90%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testLoadOptionsFromFiles()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:139:8: warning: unused variable 'ok' [-Wunused-variable]
   bool ok;
        ^~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testStereo()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:324:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testOptionsDefault()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:400:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtomWithDefaultGoodAtoms()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:424:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtom()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:448:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 90%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificExamples()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:603:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
     for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificOrder()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:676:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformTau()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:705:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformAtoms()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:749:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'int main(int, const char**)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:844:14: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, const char* argv[]) {
          ~~~~^~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:844:32: warning: unused parameter 'argv' [-Wunused-parameter]
 int main(int argc, const char* argv[]) {
                    ~~~~~~~~~~~~^~~~~~
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target rdStructChecker
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[ 90%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap/structchecker.cpp
[ 90%] Linking CXX executable testMMPA
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o  -o testMMPA -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target RGroupDecomposition
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 90%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp
[ 90%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp
[ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/ReactionUtils.cpp
[ 91%] Linking CXX executable testStructChecker
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o  -o testStructChecker -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 91%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/MoleculeParser.cpp
[ 91%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 91%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/ReactionRunner.cpp
[ 92%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/PreprocessRxn.cpp
[ 92%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/SanitizeRxn.cpp
[ 92%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp
[ 92%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 92%] Built target rdStructChecker
[ 92%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp
[ 92%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp
[ 92%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 92%] Built target RGroupDecomposition
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
Scanning dependencies of target testRGroupDecomp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target rdRGroupDecomposition
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:46:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 93%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2018.03.2 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 93%] Linking CXX executable testRGroupDecomp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o  -o testRGroupDecomp -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Built target testRGroupDecomp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Built target ChemReactions
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target testReactionFingerprints
Scanning dependencies of target testEnumeration
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
Scanning dependencies of target testReaction
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o
Scanning dependencies of target rdChemReactions
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/testReaction.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
Scanning dependencies of target MolDraw2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o
[ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/MolDraw2D.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp:378:8: warning: variable 'doLong' set but not used [-Wunused-but-set-variable]
   bool doLong = false;
        ^~~~~~
[ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Built target rdRGroupDecomposition
[ 93%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp
[ 94%] Linking CXX executable testReactionFingerprints
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o  -o testReactionFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 94%] Built target testReactionFingerprints
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp
[ 94%] Linking CXX executable testEnumeration
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o  -o testEnumeration -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 94%] Built target testEnumeration
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp
[ 95%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp
[ 95%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lboost_serialization -lcairo 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 95%] Built target MolDraw2D
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DRxnTest1
Scanning dependencies of target rdMolDraw2D
Scanning dependencies of target moldraw2DTest1
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make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
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[ 95%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o
[ 95%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/rxn_test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/test1.cpp
[ 95%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolops
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 95%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/rdmolops.cpp
[ 96%] Linking CXX executable moldraw2DRxnTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o  -o moldraw2DRxnTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lcairo 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
Scanning dependencies of target rdkit
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 96%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp
[ 96%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 96%] Built target rdChemReactions
[ 97%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/MolOps.cpp
[ 97%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bfp_op.c
[ 98%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/cache.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/cache.c
[ 98%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/guc.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/guc.c
[ 98%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/low_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/low_gist.c
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/low_gist.c: In function 'gslfp_consistent':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit declaration of function 'searchSfpCache' [-Wimplicit-function-declaration]
   fcinfo->flinfo->fn_extra = searchSfpCache(
                              ^~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment to 'void *' from 'int' makes pointer from integer without a cast [-Wint-conversion]
   fcinfo->flinfo->fn_extra = searchSfpCache(
                            ^
[ 98%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/mol_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:34:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol2s_transition':
/usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:381:18: note: in expansion of macro 'PG_GETARG_DATUM'
     CROMol mol = PG_GETARG_DATUM(1);
                  ^~~~~~~~~~~~~~~
/usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:409:18: note: in expansion of macro 'PG_GETARG_DATUM'
     CROMol mol = PG_GETARG_DATUM(1);
                  ^~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
/usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:477:18: note: in expansion of macro 'PG_GETARG_DATUM'
     CROMol mol = PG_GETARG_DATUM(1);
                  ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:33:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:484:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     PG_RETURN_INT32((int32)lst);
                     ^
/usr/include/pgsql/server/postgres.h:386:39: note: in definition of macro 'SET_4_BYTES'
 #define SET_4_BYTES(value) (((Datum) (value)) & 0xffffffff)
                                       ^~~~~
/usr/include/pgsql/server/fmgr.h:314:36: note: in expansion of macro 'Int32GetDatum'
 #define PG_RETURN_INT32(x)  return Int32GetDatum(x)
                                    ^~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:484:5: note: in expansion of macro 'PG_RETURN_INT32'
     PG_RETURN_INT32((int32)lst);
     ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:34:
/usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:488:18: note: in expansion of macro 'PG_GETARG_DATUM'
     CROMol mol = PG_GETARG_DATUM(1);
                  ^~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
[ 98%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rdkit_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: implicit declaration of function 'floor' [-Wimplicit-function-declaration]
   return (int) floor(10000*soergeldistsign(a, b));
                ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: incompatible implicit declaration of built-in function 'floor'
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c:275:16: note: include '<math.h>' or provide a declaration of 'floor'
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c:42:1:
+#include <math.h>
 
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c:275:16:
   return (int) floor(10000*soergeldistsign(a, b));
                ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused variable 'd' [-Wunused-variable]
   double d;
          ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'double calcSparseStringDiceSml(const char*, unsigned int, const char*, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:982:71: warning: unused parameter 'sza' [-Wunused-parameter]
 extern "C" double calcSparseStringDiceSml(const char *a, unsigned int sza,
                                                          ~~~~~~~~~~~~~^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:983:71: warning: unused parameter 'szb' [-Wunused-parameter]
                                           const char *b, unsigned int szb) {
                                                          ~~~~~~~~~~~~~^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsGT(const char*, unsigned int, int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1095:71: warning: unused parameter 'sza' [-Wunused-parameter]
 extern "C" bool calcSparseStringAllValsGT(const char *a, unsigned int sza,
                                                          ~~~~~~~~~~~~~^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsLT(const char*, unsigned int, int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1133:71: warning: unused parameter 'sza' [-Wunused-parameter]
 extern "C" bool calcSparseStringAllValsLT(const char *a, unsigned int sza,
                                                          ~~~~~~~~~~~~~^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeAvalonBFP(CROMol, bool, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1434:38: warning: unused parameter 'data' [-Wunused-parameter]
 extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
                               ~~~~~~~^~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1434:49: warning: unused parameter 'isQuery' [-Wunused-parameter]
 extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
                                            ~~~~~^~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1435:44: warning: unused parameter 'bitFlags' [-Wunused-parameter]
                               unsigned int bitFlags) {
                               ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionDifferenceSFP(CChemicalReaction, int, int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1874:21: warning: unused variable 'fp' [-Wunused-variable]
     FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
                     ^~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionBFP(CChemicalReaction, int, int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1896:21: warning: unused variable 'fp' [-Wunused-variable]
     FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
                     ^~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'char* findMCSsmiles(char*, char*)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1941:12: warning: unused variable 'nmols' [-Wunused-variable]
   int len, nmols = 0;
            ^~~~~
[ 98%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bfp_gist.c
[ 99%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_gin.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bfp_gin.c
[ 99%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bitstring.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bitstring.c
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
[ 99%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rdkit_io.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_io.c
[ 99%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rxn_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rxn_op.c
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment [-Wcomment]
 //  /* keep compiler quiet - no extra ; */                                \
 ^
[ 99%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/sfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/sfp_op.c
[ 99%] Linking CXX executable moldraw2DTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DTest1.dir/test1.cpp.o  -o moldraw2DTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lcairo 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 99%] Built target moldraw2DTest1
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/MolOps.cpp:30:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[100%] Linking CXX shared library librdkit.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/sql /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/sql
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/data /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/data
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/expected /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/expected
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o  -L/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/lib64 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/lib64:/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib -lpq ../../../lib/libRDKitRDInchiLib.so.1.2018.03.2 -linchi ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 -lboost_serialization -lcairo ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[100%] Built target rdkit
[100%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 -lcairo ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lboost_serialization 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[100%] Built target rdMolDraw2D
[100%] Linking CXX executable testReaction
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReaction.dir/testReaction.cpp.o  -o testReaction -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[100%] Built target testReaction
[100%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 -lcairo ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lboost_serialization 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[100%] Built target rdmolops
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/CMakeFiles 0
+ pushd Code/PgSQL/rdkit
~/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
+ chrpath -d librdkit.so
+ popd
~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
+ popd
~/build/BUILD/rdkit-Release_2018_03_2
+ pushd python3
~/build/BUILD/rdkit-Release_2018_03_2/python3 ~/build/BUILD/rdkit-Release_2018_03_2
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ export LDFLAGS
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=OFF -D RDK_BUILD_COORDGEN_SUPPORT:BOOL=OFF -D RDK_BUILD_MOLINTERCHANGE_SUPPORT:BOOL=OFF -D RDK_BUILD_PGSQL:BOOL=ON -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=ON -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 .
-- The C compiler identification is GNU 8.1.1
-- The CXX compiler identification is GNU 8.1.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Found INCHI: /usr/lib64/libinchi.so  
-- Found PythonInterp: /usr/bin/python3 (found version "3.7") 
-- Found PythonLibs: /usr/lib64/libpython3.7m.so (found version "3.7.0rc1") 
Python Install directory /usr/lib64/python3.7/site-packages
PYTHON Py_ENABLE_SHARED: 1
PYTHON USING LINK LINE: -pthread -shared -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g  -flto -fuse-linker-plugin -ffat-lto-objects -flto-partition=none
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Boost version: 1.66.0
-- Found the following Boost libraries:
--   serialization
-- Found PostgreSQL: /usr/lib64/libpq.so (found version "10.4") 
== Using strict rotor definition
-- Found BISON: /usr/bin/bison  
-- Found FLEX: /usr/bin/flex  
== Updating Filters.cpp from pains file
== Done updating pains files
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.4.2") 
-- Checking for module 'cairo'
--   Found cairo, version 1.15.12
-- Found Cairo: /usr/include/cairo  
postgres: /usr/include;/usr/include/pgsql/server
=====================================================================
After building, check
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/pgsql_install.sh
for correctness of installation paths. If everything is OK, gain 
administrator privileges, stop the PostgreSQL service, run
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/pgsql_install.sh
to install the PostgreSQL RDKit cartridge, then start again
the PostgreSQL service
=====================================================================
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3
+ make -j6
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2018_03_2/python3 -B/builddir/build/BUILD/rdkit-Release_2018_03_2/python3 --check-build-system CMakeFiles/Makefile.cmake 0
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Dict.cpp
[  2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/LocaleSwitcher.cpp
[  2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/versions.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2018.03.2 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
Scanning dependencies of target RDBoost
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Scanning dependencies of target testMatrices
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost && /usr/bin/c++  -DRDBoost_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/testRDValue.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDict.dir/testDict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/testDict.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/testMatrices.cpp
[  3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/BitVect.cpp
[  3%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers && /usr/bin/c++  -DEigenSolvers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp
[  3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/SparseBitVect.cpp
[  4%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
Scanning dependencies of target Catalogs
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs/Catalog.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2018.03.2 CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2018.03.2 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so
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[  4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/ExplicitBitVect.cpp
[  4%] Linking CXX executable testMatrices
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMatrices.dir/testMatrices.cpp.o  -o testMatrices -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
Scanning dependencies of target testQuery
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testQuery.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query/test.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs/CatalogParams.cpp
[  4%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs/CatalogEntry.cpp
[  4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Utils.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2018.03.2 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testRDValue.dir/testRDValue.cpp.o  -o testRDValue -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
[  5%] Built target testRDValue
Scanning dependencies of target testMatCalc
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  5%] Built target Catalogs
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
[  6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
[  7%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp
Scanning dependencies of target SimDivPickers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  8%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/DistPicker.cpp
[  8%] Linking CXX executable testMatCalc
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o  -o testMatCalc -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  8%] Built target testMatCalc
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/base64.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color=
[  8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/BitOps.cpp
Scanning dependencies of target Clustering
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh && /usr/bin/c++  -DClustering_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh/Clustering.cpp
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDict.dir/testDict.cpp.o  -o testDict -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[  8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/DiscreteDistMat.cpp
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make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
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[  8%] Built target testDict
Scanning dependencies of target testChemicalFeatures
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[  8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/DiscreteValueVect.cpp
[  8%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/testChemicalFeatures.cpp
[  8%] Linking CXX executable testQuery
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testQuery.dir/test.cpp.o  -o testQuery -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  8%] Built target testQuery
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
Scanning dependencies of target rdBase
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  8%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap/RDBase.cpp
[  8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/FPBReader.cpp
[  8%] Linking CXX executable testChemicalFeatures
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o  -o testChemicalFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[  8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/MultiFPBReader.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  8%] Built target testChemicalFeatures
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/MaxMinPicker.cpp
[  8%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/HierarchicalClusterPicker.cpp
[  9%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKithc.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  9%] Built target Clustering
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap/RDBase.cpp:15:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[  9%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKithc.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  9%] Built target SimDivPickers
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
Scanning dependencies of target testSimDivPickers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  9%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/testPickers.cpp
[ 10%] Linking CXX shared library ../../lib/libRDKitDataStructs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2018.03.2 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 10%] Built target DataStructs
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
Scanning dependencies of target testFPB
Scanning dependencies of target testDataStructs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Scanning dependencies of target testMultiFPB
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
Scanning dependencies of target RDGeometryLib
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
[ 11%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o
[ 11%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testFPB.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 11%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testMultiFPB.cpp
[ 11%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.cpp
[ 11%] Linking CXX executable testSimDivPickers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o  -o testSimDivPickers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread ../../lib/libRDKithc.so.1.2018.03.2 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 11%] Built target testSimDivPickers
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
Scanning dependencies of target cDataStructs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 12%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/DataStructs.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp: In function 'int main()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp:1398:12: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
   } catch (IndexErrorException) {
            ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp: In instantiation of 'void Test(T) [with T = SparseBitVect]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp:1417:17:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp:118:5: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
   } catch (IndexErrorException) {
     ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp: In instantiation of 'void Test(T) [with T = ExplicitBitVect]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp:1423:19:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp:118:5: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
[ 13%] Linking CXX executable testFPB
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFPB.dir/testFPB.cpp.o  -o testFPB -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 13%] Built target testFPB
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMetricMatrixCalc
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 13%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp
[ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/DiscreteValueVect.cpp
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o  -o testMultiFPB -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/SparseIntVect.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Transform2D.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/wrap_SparseBV.cpp
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/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/UniformGrid3D.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/wrap_BitOps.cpp
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Scanning dependencies of target rdSimDivPickers
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/wrap_FPB.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/wrap_Utils.cpp
[ 17%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap/MaxMinPicker.cpp
Scanning dependencies of target InfoTheory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 17%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory && /usr/bin/c++  -DInfoTheory_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/InfoBitRanker.cpp
[ 18%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 18%] Built target RDGeometryLib
[ 18%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp
[ 18%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
Scanning dependencies of target GraphMol
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Atom.cpp
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testTransforms
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[ 18%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/testTransforms.cpp
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
[ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryAtom.cpp
[ 18%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp
Scanning dependencies of target testGrid
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 18%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/testGrid.cpp
[ 18%] Linking CXX executable testTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTransforms.dir/testTransforms.cpp.o  -o testTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 18%] Built target testTransforms
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
Scanning dependencies of target rdGeometry
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make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 19%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap/Point.cpp
[ 19%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../../lib/libRDKithc.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 19%] Built target rdSimDivPickers
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryBond.cpp
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Bond.cpp
[ 20%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
Scanning dependencies of target Alignment
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 20%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment && /usr/bin/c++  -DAlignment_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/AlignPoints.cpp
[ 20%] Linking CXX executable testGrid
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testGrid.dir/testGrid.cpp.o  -o testGrid -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 20%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap/UniformGrid3D.cpp
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
Scanning dependencies of target Optimizer
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 20%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer && /usr/bin/c++  -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer/BFGSOpt.cpp
[ 20%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer && /usr/bin/c++  -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer/LinearSearch.cpp
[ 20%] Linking CXX shared library ../../../lib/libRDKitAlignment.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2018.03.2 CMakeFiles/Alignment.dir/AlignPoints.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so
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[ 20%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap/rdGeometry.cpp
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolOps.cpp
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FindRings.cpp
[ 20%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2018.03.2 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ROMol.cpp
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
[ 20%] Built target Optimizer
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
Scanning dependencies of target rdInfoTheory
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Scanning dependencies of target cQuantize
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make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
[ 20%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Data && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Data/cQuantize.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 20%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp
[ 20%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
Scanning dependencies of target testAlignment
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[ 20%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/testAlignment.cpp
[ 21%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap/rdAlignment.cpp
[ 21%] Linking CXX executable testAlignment
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testAlignment.dir/testAlignment.cpp.o  -o testAlignment -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer/testOptimizer.cpp
[ 21%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target ForceField
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/ForceField.cpp
[ 21%] Linking CXX executable testOptimizer
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o  -o testOptimizer -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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[ 21%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/AngleBend.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/BondStretch.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/Nonbonded.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/TorsionAngle.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/DistanceConstraint.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/AngleConstraint.cpp
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PeriodicTable.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RWMol.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/TorsionConstraint.cpp
[ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/atomic_data.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/PositionConstraint.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/Params.cpp
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[ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/StretchBend.cpp
[ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/BondStretch.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/BondIterators.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/AngleBend.cpp
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Aromaticity.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/OopBend.cpp
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Kekulize.cpp
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDiscriminators.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/TorsionAngle.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/Nonbonded.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ConjugHybrid.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/DistanceConstraint.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/AddHs.cpp
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Matrices.cpp
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Chirality.cpp
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RingInfo.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/AddHs.cpp: In function 'bool RDKit::MolOps::{anonymous}::adjustStereoAtomsIfRequired(RDKit::RWMol&, const RDKit::Atom*, const RDKit::Atom*)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/AddHs.cpp:497:9: warning: unused variable 'dblBond' [-Wunused-variable]
   Bond *dblBond = nullptr;
         ^~~~~~~
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Conformer.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Chirality.cpp: In function 'bool RDKit::MolOps::{anonymous}::isBondCandidateForStereo(const RDKit::Bond*, const RDKit::ROMol&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Chirality.cpp:1737:62: warning: unused parameter 'mol' [-Wunused-parameter]
 bool isBondCandidateForStereo(const Bond *bond, const ROMol &mol) {
                                                 ~~~~~~~~~~~~~^~~
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Renumber.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/TorsionConstraint.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/AngleConstraint.cpp
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/PositionConstraint.cpp
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/Params.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/Params.cpp: In constructor 'ForceFields::MMFF::MMFFAromCollection::MMFFAromCollection(const uint8_t*)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/Params.cpp:50:49: warning: division 'sizeof (const uint8_t* {aka const unsigned char*}) / sizeof (const uint8_t {aka const unsigned char})' does not compute the number of array elements [-Wsizeof-pointer-div]
   for (unsigned int i = 0; i < sizeof(mmffArom) / sizeof(mmffArom[0]); ++i) {
                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/Params.cpp:46:62: note: first 'sizeof' operand was declared here
 MMFFAromCollection::MMFFAromCollection(const boost::uint8_t *mmffArom) {
                                        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/AdjustQuery.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Resonance.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/new_canon.cpp
[ 29%] Linking CXX shared library ../../lib/libRDKitForceField.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2018.03.2 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 29%] Built target ForceField
[ 29%] Linking CXX shared library ../../lib/libRDKitGraphMol.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2018.03.2 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
[ 29%] [FLEX][SmartsL] Building scanner with flex 2.6.1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmarts_ -o/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/lex.yysmarts.cpp smarts.ll
Scanning dependencies of target MolTransforms
Scanning dependencies of target MolCatalog
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Scanning dependencies of target Subgraphs
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Scanning dependencies of target SubstructMatch
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[ 29%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o
[ 29%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o
[ 29%] [BISON][SmilesY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog && /usr/bin/c++  -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/smiles.tab.cpp smiles.yy
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms && /usr/bin/c++  -DMolTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/MolTransforms.cpp
[ 29%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o
[ 29%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges && /usr/bin/c++  -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/GasteigerCharges.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/Subgraphs.cpp
[ 30%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct/SubstructMatch.cpp
[ 30%] [BISON][SmartsY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -pyysmarts_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/smarts.tab.cpp smarts.yy
smarts.yy: warning: 108 shift/reduce conflicts [-Wconflicts-sr]
[ 31%] [FLEX][SmilesL] Building scanner with flex 2.6.1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmiles_ -o/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/lex.yysmiles.cpp smiles.ll
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SmilesParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/SmilesParse.cpp
[ 32%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges && /usr/bin/c++  -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/GasteigerParams.cpp
[ 33%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog && /usr/bin/c++  -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/MolCatalogParams.cpp
[ 33%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/SubgraphUtils.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Built target MolTransforms
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
Scanning dependencies of target Trajectory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory/Trajectory.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Built target MolCatalog
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] [FLEX][SlnL] Building scanner with flex 2.6.1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/flex -Pyysln_ -o/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/lex.yysln.cpp sln.ll
[ 34%] [BISON][SlnY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/bison -pyysln_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/sln.tab.cpp sln.yy
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/SLNParse.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Built target PartialCharges
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
Scanning dependencies of target rdqueries
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/rdqueries.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Built target Subgraphs
[ 34%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o
[ 34%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct/SubstructUtils.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Queries.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2018.03.2 CMakeFiles/Trajectory.dir/Trajectory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Built target Trajectory
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp
[ 34%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/SLNAttribs.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Built target SubstructMatch
[ 34%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp
[ 35%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/sln.tab.cpp
[ 35%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/lex.yysln.cpp
sln.yy:54: warning: "YYDEBUG" redefined
 #define YYDEBUG 1
 
In file included from sln.yy:50:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/sln.tab.hpp:37: note: this is the location of the previous definition
 # define YYDEBUG 0
 
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryAtom.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RDKitQueries.h:20,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Queries.cpp:15:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = double]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:820:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = bool]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = int]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = double]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:820:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = bool]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = int]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
sln.yy: In function 'void yysln_error(const char*, std::vector<RDKit::RWMol*>*, bool, void*, const char*)':
sln.yy:58:43: warning: unused parameter 'ms' [-Wunused-parameter]
              std::vector<RDKit::RWMol *> *ms,bool doQ,
              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
sln.yy:58:51: warning: unused parameter 'doQ' [-Wunused-parameter]
              std::vector<RDKit::RWMol *> *ms,bool doQ,
                                              ~~~~~^~~
sln.yy:59:13: warning: unused parameter 'scanner' [-Wunused-parameter]
       void *scanner,const char * msg )
       ~~~~~~^~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'yy_buffer_state* yysln__scan_bytes(const char*, int, yyscan_t)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/lex.yysln.cpp:2543:17: warning: comparison of integer expressions of different signedness: 'yy_size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  for ( i = 0; i < _yybytes_len; ++i )
               ~~^~~~~~~~~~~~~~
[ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o
[ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/SmilesParseOps.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/SmilesWrite.cpp
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
Scanning dependencies of target Depictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/RDDepictor.cpp
[ 35%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2018.03.2 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 36%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Built target SLNParse
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
[ 36%] Built target rdChemicalFeatures
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
[ 36%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp
Scanning dependencies of target MolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/RDDepictor.cpp: In function 'unsigned int RDDepict::compute2DCoords(RDKit::ROMol&, const INT_POINT2D_MAP*, bool, bool, unsigned int, unsigned int, int, bool, bool)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/RDDepictor.cpp:310:58: warning: unused parameter 'forceRDKit' [-Wunused-parameter]
                              bool permuteDeg4Nodes, bool forceRDKit) {
                                                     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/RDDepictor.cpp: In function 'unsigned int RDDepict::compute2DCoordsMimicDistMat(RDKit::ROMol&, const DOUBLE_SMART_PTR*, bool, bool, double, unsigned int, unsigned int, int, bool, bool)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/RDDepictor.cpp:421:10: warning: unused parameter 'forceRDKit' [-Wunused-parameter]
     bool forceRDKit) {
     ~~~~~^~~~~~~~~~
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Built target rdqueries
[ 36%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign && /usr/bin/c++  -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/AlignMolecules.cpp
Scanning dependencies of target rdPartialCharges
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign && /usr/bin/c++  -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
[ 36%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/DepictUtils.cpp
[ 37%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/SmartsWrite.cpp
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 37%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp
Scanning dependencies of target rdMolTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 37%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target ShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 37%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp
[ 37%] Linking CXX shared library ../../../lib/libRDKitDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2018.03.2 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 37%] Built target Depictor
[ 37%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CXSmilesOps.cpp
[ 37%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp
[ 37%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/smiles.tab.cpp
[ 37%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2018.03.2 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 37%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
smiles.yy: In function 'void yysmiles_error(const char*, std::vector<RDKit::RWMol*>*, std::__cxx11::list<unsigned int>*, void*, const char*)':
smiles.yy:38:29: warning: unused parameter 'input' [-Wunused-parameter]
 yysmiles_error( const char *input,
                 ~~~~~~~~~~~~^~~~~
smiles.yy:40:42: warning: unused parameter 'branchPoints' [-Wunused-parameter]
                 std::list<unsigned int> *branchPoints,
                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
smiles.yy:41:9: warning: unused parameter 'scanner' [-Wunused-parameter]
   void *scanner,const char * msg )
   ~~~~~~^~~~~~~
[ 37%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 38%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
[ 38%] Built target rdPartialCharges
[ 38%] Built target MolAlign
[ 38%] Built target ShapeHelpers
[ 38%] Built target rdMolTransforms
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
[ 38%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/smarts.tab.cpp
[ 38%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o
[ 38%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/lex.yysmiles.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/lex.yysmarts.cpp
Scanning dependencies of target rdtrajectory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
Scanning dependencies of target rdShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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[ 39%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o
[ 39%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Trajectory.cpp
[ 39%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/rdTrajectory.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/lex.yysmarts.cpp: In function 'yy_buffer_state* yysmarts__scan_bytes(const char*, int, yyscan_t)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2477:17: warning: comparison of integer expressions of different signedness: 'yy_size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  for ( i = 0; i < _yybytes_len; ++i )
               ~~^~~~~~~~~~~~~~
smarts.yy: In function 'void yysmarts_error(const char*, std::vector<RDKit::RWMol*>*, void*, const char*)':
smarts.yy:24:29: warning: unused parameter 'input' [-Wunused-parameter]
 yysmarts_error( const char *input,
                 ~~~~~~~~~~~~^~~~~
smarts.yy:25:46: warning: unused parameter 'ms' [-Wunused-parameter]
                 std::vector<RDKit::RWMol *> *ms,
                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
smarts.yy:26:9: warning: unused parameter 'scanner' [-Wunused-parameter]
   void *scanner,const char * msg )
   ~~~~~~^~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function 'yy_buffer_state* yysmiles__scan_bytes(const char*, int, yyscan_t)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2762:17: warning: comparison of integer expressions of different signedness: 'yy_size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  for ( i = 0; i < _yybytes_len; ++i )
               ~~^~~~~~~~~~~~~~
[ 40%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 40%] Built target SmilesParse
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMemTest1
Scanning dependencies of target RDInchiLib
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make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
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[ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o
[ 40%] Building CXX object External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDInchiLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/inchi.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/memtest1.cpp
Scanning dependencies of target ForceFieldHelpers
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Scanning dependencies of target FileParsers
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[ 40%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp
[ 40%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/Mol2FileParser.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Conformer.h:13,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ROMol.h:36,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h: In function 'boost::python::tuple RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                     ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                                 ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                     ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                                 ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                     ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                                 ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                     ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
       : Point(other), x(other.x), y(other.y), z(other.z) {}
                                                 ~~~~~~^
[ 40%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 40%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 40%] Built target rdtrajectory
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestCanon
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testCanon.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Built target rdShapeHelpers
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color=
Scanning dependencies of target test-valgrind
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/test-valgrind.cpp
[ 41%] Linking CXX executable graphmolMemTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o  -o graphmolMemTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Built target graphmolMemTest1
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
[ 41%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp
Scanning dependencies of target graphmolqueryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/querytest.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testCanon.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testCanon.cpp:180:18: warning: catching polymorphic type 'class RDKit::MolSanitizeException' by value [-Wcatch-value=]
         } catch (MolSanitizeException) {
                  ^~~~~~~~~~~~~~~~~~~~
[ 42%] Linking CXX executable test-valgrind
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o  -o test-valgrind -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 42%] Linking CXX shared library ../../lib/libRDKitRDInchiLib.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDInchiLib.so.1 -o ../../lib/libRDKitRDInchiLib.so.1.2018.03.2 CMakeFiles/RDInchiLib.dir/inchi.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: -linchi ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 42%] Built target test-valgrind
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolIterTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/itertest.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDInchiLib.so.1.2018.03.2 ../../lib/libRDKitRDInchiLib.so.1 ../../lib/libRDKitRDInchiLib.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Built target RDInchiLib
[ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp
[ 43%] Linking CXX executable graphmoltestCanon
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o  -o graphmoltestCanon -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolcpTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/cptest.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryAtom.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RDKitQueries.h:20,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/querytest.cpp:13:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = double]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = double]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:820:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = int]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:820:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = int]':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
       } catch (KeyErrorException e) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
       } catch (boost::bad_any_cast) {
         ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp: In member function 'void RDKit::MMFF::MMFFMolProperties::setMMFFHydrogenType(const RDKit::Atom*)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:2343:13: warning: this statement may fall through [-Wimplicit-fallthrough=]
             if (isHOS) {
             ^~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:2350:11: note: here
           default:
           ^~~~~~~
[ 43%] Linking CXX executable graphmolIterTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolIterTest.dir/itertest.cpp.o  -o graphmolIterTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 43%] Linking CXX executable graphmolcpTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolcpTest.dir/cptest.cpp.o  -o graphmolcpTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Built target graphmolcpTest
[ 43%] Built target graphmolIterTest
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
[ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o
[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp
[ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileParser.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp
Scanning dependencies of target ChemTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/ChemTransforms.cpp
[ 44%] Linking CXX executable graphmolqueryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o  -o graphmolqueryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Built target graphmolqueryTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smaTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/smatest.cpp
[ 44%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileParser.cpp: In function 'RDKit::Bond* RDKit::{anonymous}::ParseMolFileBondLine(const string&, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileParser.cpp:1408:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
     } catch (boost::bad_lexical_cast) {
                     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileParser.cpp:1436:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
     } catch (boost::bad_lexical_cast) {
                     ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileParser.cpp:1444:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
     } catch (boost::bad_lexical_cast) {
                     ^~~~~~~~~~~~~~~~
[ 45%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp: In function 'void RDKit::MolFragmenter::{anonymous}::checkChiralityPostMove(const RDKit::ROMol&, const RDKit::Atom*, RDKit::Atom*, const RDKit::Bond*)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp:367:16: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
       if (bidx != bond->getIdx()) {
           ~~~~~^~~~~~~~~~~~~~~~~
[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileStereochem.cpp
[ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileWriter.cpp
[ 46%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileWriter.cpp: In function 'std::__cxx11::string RDKit::MolToMolBlock(const RDKit::ROMol&, bool, int, bool, bool)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileWriter.cpp:1196:12: warning: catching polymorphic type 'class RDKit::{anonymous}::RequiresV3000Exception' by value [-Wcatch-value=]
   } catch (RequiresV3000Exception) {
            ^~~~~~~~~~~~~~~~~~~~~~
[ 46%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
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[ 46%] Built target ForceFieldHelpers
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
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Scanning dependencies of target FilterCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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[ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp
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Scanning dependencies of target Fingerprints
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[ 47%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Filters.cpp
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[ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/Fingerprints.cpp
[ 48%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/SDMolSupplier.cpp
[ 48%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/FilterCatalog.cpp
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 48%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/test1.cpp
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smaTest1.dir/smatest.cpp.o  -o smaTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/test2.cpp
[ 49%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/PatternFingerprints.cpp
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubgraphs2.dir/test2.cpp.o  -o testSubgraphs2 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/test1.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/MorganFingerprints.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testPartialCharges.dir/test1.cpp.o  -o testPartialCharges -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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Scanning dependencies of target rdForceFieldHelpers
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp
[ 50%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp
[ 50%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 50%] Built target rdForceFieldHelpers
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target MolChemicalFeatures
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
[ 50%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/FilterMatchers.cpp
[ 50%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp
[ 50%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp
[ 50%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp
[ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp
[ 51%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 51%] Built target FilterCatalog
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target ReducedGraphs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 51%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp
[ 51%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so
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[ 51%] Built target MolChemicalFeatures
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target testSLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 51%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/test.cpp
[ 52%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp
[ 52%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
Scanning dependencies of target rdchem
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/rdchem.cpp
[ 52%] Linking CXX executable testSLNParse
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1
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make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o
[ 52%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
Scanning dependencies of target rdinchi
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[ 53%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/DistGeomUtils.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdinchi_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdinchi.dir/pyInchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap/pyInchi.cpp
[ 53%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o
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[ 53%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o
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[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/SmilesWriter.cpp
[ 53%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp
[ 53%] Linking CXX shared module ../../../rdkit/Chem/rdinchi.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdinchi.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdinchi.so CMakeFiles/rdinchi.dir/pyInchi.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitRDInchiLib.so.1.2018.03.2 -linchi ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 53%] Built target rdinchi
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceField
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make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 53%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap/ForceField.cpp
[ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TDTMolSupplier.cpp
[ 55%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/FragCatParams.cpp
[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TDTWriter.cpp
[ 55%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/types.h:26,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolWriters.h:14,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TDTWriter.cpp:16:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TDTWriter.cpp: In destructor 'virtual RDKit::TDTWriter::~TDTWriter()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Invariant.h:104:11: warning: throw will always call terminate() [-Wterminate]
     throw inv;                                                         \
           ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT'
     CHECK_INVARIANT(dp_ostream,
     ^~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Invariant.h:104:11: note: in C++11 destructors default to noexcept
     throw inv;                                                         \
           ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT'
     CHECK_INVARIANT(dp_ostream,
     ^~~~~~~~~~~~~~~
[ 55%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 55%] Built target rdForceField
[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o
[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o
[ 56%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Bond.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/DistViolationContrib.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Atom.cpp
[ 56%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so
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[ 56%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/ChiralViolationContrib.cpp
[ 56%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2018.03.2 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Mol.cpp
[ 56%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o
[ 56%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/AtomPairs.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/MACCS.cpp
[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Conformer.cpp
[ 57%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2018.03.2 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/RingInfo.cpp
[ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/EditableMol.cpp
[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o
[ 58%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/MonomerInfo.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TplFileParser.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RDKitBase.h:20,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/EditableMol.cpp:22:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/EditableMol.cpp: In destructor 'RDKit::{anonymous}::EditableMol::~EditableMol()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Invariant.h:112:11: warning: throw will always call terminate() [-Wterminate]
     throw inv;                                                             \
           ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Invariant.h:112:11: note: in definition of macro 'PRECONDITION'
     throw inv;                                                             \
           ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Invariant.h:112:11: note: in C++11 destructors default to noexcept
     throw inv;                                                             \
           ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Invariant.h:112:11: note: in definition of macro 'PRECONDITION'
     throw inv;                                                             \
           ^~~
[ 58%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp
[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TplFileWriter.cpp
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
[ 58%] Built target DistGeometry
[ 58%] Built target FragCatalog
[ 58%] Built target Fingerprints
[ 58%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/MolBundle.cpp
Scanning dependencies of target rdMolChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o
[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBWriter.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBParser.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBWriter.cpp: In function 'std::__cxx11::string RDKit::GetPDBBondLines(const RDKit::Atom*, bool, bool, bool, unsigned int&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBWriter.cpp:163:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
         v.push_back(dst);
         ~~~~~~~~~~~^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBWriter.cpp:164:7: note: here
       case Bond::TRIPLE:
       ^~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBWriter.cpp:165:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
         v.push_back(dst);
         ~~~~~~~~~~~^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBWriter.cpp:166:7: note: here
       case Bond::DOUBLE:
       ^~~~
[ 58%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBParser.cpp:24:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
 static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
                     ^~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBSupplier.cpp
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o
[ 59%] Built target rdchem
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/ProximityBonds.cpp
[ 59%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
Scanning dependencies of target rdReducedGraphs
Scanning dependencies of target testReducedGraphs
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[ 60%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 60%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp
[ 60%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/test1.cpp
[ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/SequenceParsers.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/ProximityBonds.cpp:10:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
 static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
                     ^~~~~~~~~~~~
[ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/SequenceWriters.cpp
[ 60%] Linking CXX executable testReducedGraphs
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReducedGraphs.dir/test1.cpp.o  -o testReducedGraphs -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 61%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
[ 61%] Built target testReducedGraphs
[ 61%] Built target rdReducedGraphs
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target SubstructLibrary
[ 61%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
[ 61%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
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Scanning dependencies of target DistGeomHelpers
[ 61%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 61%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/testDistGeom.cpp
[ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
[ 61%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2018.03.2 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeom
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[ 62%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap && /usr/bin/c++  -DDistGeom_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap/DistGeom.cpp
[ 62%] Linking CXX executable testDistGeom
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o  -o testDistGeom -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/molopstest.cpp
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolTest1
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/test1.cpp
[ 63%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Built target SubstructLibrary
[ 63%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 63%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestChirality
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 63%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testChirality.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Built target DistGeom
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPickler
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testPickler.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molBundleTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testMolBundle.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/molopstest.cpp: In function 'void testRenumberAtoms()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/molopstest.cpp:4693:12: warning: unused variable 'nm' [-Wunused-variable]
     ROMol *nm = MolOps::renumberAtoms(*m, nVect);
            ^~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/molopstest.cpp: In function 'void testGithub1281()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/molopstest.cpp:6940:16: warning: unused variable 'm' [-Wunused-variable]
         RWMol *m = SmilesToMol(smiles);
                ^
[ 63%] Linking CXX executable molBundleTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o  -o molBundleTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
Scanning dependencies of target resMolSupplierTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/resMolSupplierTest.cpp
[ 63%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Built target DistGeomHelpers
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPicklerGlobalSetting
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testPicklerGlobalSettings.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testPicklerGlobalSettings.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testPicklerGlobalSettings.cpp:256:14: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
          ~~~~^~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testPicklerGlobalSettings.cpp:256:26: warning: unused parameter 'argv' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
                    ~~~~~~^~~~~~
[ 63%] Linking CXX executable graphmolTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolTest1.dir/test1.cpp.o  -o graphmolTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
Scanning dependencies of target hanoiTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/hanoitest.cpp
[ 63%] Linking CXX executable resMolSupplierTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o  -o resMolSupplierTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Built target resMolSupplierTest
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target testDepictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/testDepictor.cpp
[ 64%] Linking CXX executable graphmoltestPickler
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o  -o graphmoltestPickler -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Built target graphmoltestPickler
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDepictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp
[ 64%] Linking CXX executable graphmoltestPicklerGlobalSetting
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o  -o graphmoltestPicklerGlobalSetting -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smiTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/smiTest1.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/test.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: In function 'void RDDepict::setPreferCoordGen(bool)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:131:29: warning: unused parameter 'value' [-Wunused-parameter]
 void setPreferCoordGen(bool value) {
                        ~~~~~^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/test.cpp: In function 'void testFail()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/test.cpp:167:14: warning: catching polymorphic type 'class RDKit::MolSanitizeException' by value [-Wcatch-value=]
     } catch (MolSanitizeException) {
              ^~~~~~~~~~~~~~~~~~~~
[ 64%] Linking CXX executable graphmoltestChirality
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o  -o graphmoltestChirality -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Built target graphmoltestChirality
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
Scanning dependencies of target cxsmilesTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/cxsmiles_test.cpp
[ 64%] Linking CXX executable hanoiTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/hanoiTest.dir/hanoitest.cpp.o  -o hanoiTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 64%] Linking CXX executable testDepictor
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDepictor.dir/testDepictor.cpp.o  -o testDepictor -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Built target hanoiTest
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Scanning dependencies of target testSequence
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
[ 64%] Built target testDepictor
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
[ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/testSequence.cpp
Scanning dependencies of target fileParsersTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/test1.cpp
[ 64%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Built target rdDepictor
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolSupplier
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/testMolSupplier.cpp
[ 65%] Linking CXX executable testSequence
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSequence.dir/testSequence.cpp.o  -o testSequence -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Built target testSequence
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolWriter
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/testMolWriter.cpp
[ 67%] Linking CXX executable cxsmilesTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o  -o cxsmilesTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target cxsmilesTest
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
Scanning dependencies of target testTplParser
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/testTpls.cpp
[ 67%] Linking CXX executable testTplParser
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTplParser.dir/testTpls.cpp.o  -o testTplParser -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target testTplParser
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
Scanning dependencies of target testMol2ToMol
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/testMol2ToMol.cpp
[ 67%] Linking CXX executable testMolSupplier
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o  -o testMolSupplier -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target testMolSupplier
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubstructMatch
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 68%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct/test1.cpp
[ 68%] Linking CXX executable testMolWriter
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o  -o testMolWriter -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 68%] Built target testMolWriter
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testChemTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 69%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/testChemTransforms.cpp
[ 70%] Linking CXX executable testMol2ToMol
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o  -o testMol2ToMol -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Built target testMol2ToMol
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
Scanning dependencies of target filterCatalogTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp
[ 70%] Linking CXX executable graphmolMolOpsTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o  -o graphmolMolOpsTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Built target graphmolMolOpsTest
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfiltercatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp
[ 70%] Linking CXX executable smiTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smiTest1.dir/test.cpp.o  -o smiTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Built target smiTest1
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testFragCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/test1.cpp
[ 71%] Linking CXX executable filterCatalogTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o  -o filterCatalogTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target filterCatalogTest
[ 71%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfragcatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp
[ 71%] Linking CXX executable testSubstructMatch
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubstructMatch.dir/test1.cpp.o  -o testSubstructMatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target testSubstructMatch
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testFingerprints
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/test1.cpp
[ 71%] Linking CXX executable testFragCatalog
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFragCatalog.dir/test1.cpp.o  -o testFragCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target testFragCatalog
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/test1.cpp
[ 71%] Linking CXX executable testChemTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o  -o testChemTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target testChemTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp
[ 71%] Linking CXX executable fileParsersTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/fileParsersTest1.dir/test1.cpp.o  -o fileParsersTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target fileParsersTest1
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp
[ 71%] Linking CXX executable testMolTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolTransforms.dir/test1.cpp.o  -o testMolTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target testMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testCrystalForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp
[ 71%] Linking CXX executable testCrystalForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o  -o testCrystalForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target testCrystalForceField
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeomHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp
[ 71%] Linking CXX executable testMMFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o  -o testMMFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
[ 71%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp
Scanning dependencies of target rdDistGeom
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++  -DBOOST_PYTHON_MAX_ARITY=32 -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
[ 71%] Linking CXX executable testUFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o  -o testUFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target testFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp
[ 71%] Linking CXX executable testFingerprints
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFingerprints.dir/test1.cpp.o  -o testFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target testFingerprints
[ 71%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp
[ 71%] Linking CXX executable testFeatures
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFeatures.dir/testFeatures.cpp.o  -o testFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target testFeatures
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/test1.cpp
[ 72%] Linking CXX executable testDistGeomHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o  -o testDistGeomHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 72%] Built target testDistGeomHelpers
[ 72%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp
[ 72%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 73%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
[ 73%] Built target rdDistGeom
[ 73%] Built target rdfiltercatalog
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target MMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
Scanning dependencies of target rdMolCatalog
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Scanning dependencies of target FMCS
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 74%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA && /usr/bin/c++  -DMMPA_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/MMPA.cpp
[ 74%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/FMCS.cpp
[ 74%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp
[ 74%] Linking CXX executable testShapeHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o  -o testShapeHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 74%] Built target testShapeHelpers
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target trajectoryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 74%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory/trajectoryTest.cpp
[ 74%] Linking CXX executable testMolCatalog
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolCatalog.dir/test1.cpp.o  -o testMolCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 74%] Built target testMolCatalog
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target substructLibraryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 74%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp
[ 75%] Linking CXX executable trajectoryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o  -o trajectoryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:248:14: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
          ~~~~^~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:248:26: warning: unused parameter 'argv' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
                    ~~~~~~^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 75%] Built target trajectoryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSubstructLibrary
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 76%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp
[ 76%] Linking CXX shared library ../../../lib/libRDKitMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2018.03.2 CMakeFiles/MMPA.dir/MMPA.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so
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[ 76%] Built target MMPA
[ 76%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Seed.cpp
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolfiles
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 76%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/rdmolfiles.cpp
[ 76%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 76%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp
[ 76%] Linking CXX executable substructLibraryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o  -o substructLibraryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 76%] Built target rdMolCatalog
[ 76%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 76%] Built target substructLibraryTest
[ 76%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/SubstructMatchCustom.cpp
[ 76%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp
[ 76%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/SDMolSupplier.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp:23:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 76%] Linking CXX shared library ../../../lib/libRDKitFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2018.03.2 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 76%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/TDTMolSupplier.cpp
[ 76%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/SmilesMolSupplier.cpp
[ 76%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/SmilesWriter.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/SmilesWriter.cpp:20:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/SDWriter.cpp
[ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/TDTWriter.cpp
[ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/PDBWriter.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/SDWriter.cpp:21:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/TDTWriter.cpp:21:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/PDBWriter.cpp:20:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
[ 78%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o
[ 78%] Built target FMCS
[ 78%] Built target rdSubstructLibrary
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target Descriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
Scanning dependencies of target testMMFFForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
Scanning dependencies of target testUFFForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Crippen.cpp
[ 79%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/testMMFFForceField.cpp
[ 80%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/testUFFForceField.cpp
[ 81%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/MolDescriptors.cpp
[ 81%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Crippen.cpp: In constructor 'RDKit::Descriptors::CrippenParamCollection::CrippenParamCollection(const string&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Crippen.cpp:171:25: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
         } catch (boost::bad_lexical_cast) {
                         ^~~~~~~~~~~~~~~~
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
[ 81%] Built target rdmolfiles
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target testFMCS
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Scanning dependencies of target rdFMCS
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/testFMCS_Unit.cpp
[ 82%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp
[ 82%] Linking CXX executable testUFFForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o  -o testUFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 82%] Built target testUFFForceField
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
[ 82%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/MolSurf.cpp
Scanning dependencies of target FMCStest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
[ 82%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 83%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test/testFMCS.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Built target rdfragcatalog
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/MMPA_UnitTest.cpp
[ 83%] Linking CXX executable testFMCS
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o  -o testFMCS -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 83%] Linking CXX executable testMMFFForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o  -o testMMFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Lipinski.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Built target testMMFFForceField
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMMPA
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp
[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp
[ 83%] Linking CXX executable testMMPA
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o  -o testMMPA -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Linking CXX executable FMCStest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/FMCStest.dir/testFMCS.cpp.o  -o FMCStest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
[ 83%] Built target testMMPA
[ 83%] Built target rdFMCS
[ 83%] Built target FMCStest
Scanning dependencies of target RGroupDecomposition
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[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o
[ 84%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/MQN.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Property.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/AUTOCORR2D.cpp
[ 84%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp
[ 84%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/USRDescriptor.cpp
[ 84%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2018.03.2 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so
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[ 84%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testInchi.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/test.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/test.cpp
Scanning dependencies of target ChemReactions
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Reaction.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:14: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
          ~~~~^~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:26: warning: unused parameter 'argv' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
                    ~~~~~~^~~~~~
[ 84%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Built target RGroupDecomposition
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/testMolAlign.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/test.cpp: In function 'void testProperties()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/test.cpp:1912:14: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
     } catch (KeyErrorException) {
              ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/test.cpp: In function 'void testStereoCounting()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/test.cpp:1960:12: warning: catching polymorphic type 'class ValueErrorException' by value [-Wcatch-value=]
   } catch (ValueErrorException) {
            ^~~~~~~~~~~~~~~~~~~
[ 84%] Linking CXX executable testAUTOCORR2D
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o  -o testAUTOCORR2D -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Built target testAUTOCORR2D
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp
[ 84%] Linking CXX executable testInchi
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/testInchi.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testInchi.dir/test.cpp.o  -o testInchi -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib -linchi ../../lib/libRDKitRDInchiLib.so.1.2018.03.2 -linchi ../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Built target testInchi
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target MolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash && /usr/bin/c++  -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/MolHash.cpp
[ 84%] Linking CXX executable testMolAlign
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o  -o testMolAlign -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Built target testMolAlign
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target StructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructChecker.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Conformer.h:13,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ROMol.h:36,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/GraphMol.h:18,
                 from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
     x = other.x;
         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:85:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
     y = other.y;
         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:86:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
     z = other.z;
         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributions(boost::python::api::object, boost::python::api::object)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
     x = other.x;
         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:85:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
     y = other.y;
         ~~~~~~^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:86:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
     z = other.z;
         ~~~~~~^
[ 84%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash && /usr/bin/c++  -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/HashToString.cpp
[ 85%] Linking CXX executable testDescriptors
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDescriptors.dir/test.cpp.o  -o testDescriptors -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 85%] Built target testDescriptors
[ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/MDLParser.cpp
[ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
Scanning dependencies of target testRGroupDecomp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 86%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp
[ 86%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 86%] Built target rdMolAlign
[ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/DaylightParser.cpp
[ 86%] Linking CXX shared library ../../../lib/libRDKitMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2018.03.2 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 86%] Built target MolHash
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target rdRGroupDecomposition
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 86%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::parseOptionsJSON(const string&, RDKit::StructureCheck::StructCheckerOptions&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:33:19: warning: unused variable 'iss' [-Wunused-variable]
     std::istream &iss = ss;
                   ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector<std::pair<RDKit::StructureCheck::AugmentedAtom, RDKit::StructureCheck::AugmentedAtom> >&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:356:12: warning: unused variable 'k' [-Wunused-variable]
   unsigned k = fscanf(fp, "%d", &n);
            ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::loadChargeDataTables(const string&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:665:46: warning: unused parameter 'path' [-Wunused-parameter]
 bool loadChargeDataTables(const std::string &path) {
                           ~~~~~~~~~~~~~~~~~~~^~~~
[ 86%] Linking CXX executable testRGroupDecomp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o  -o testRGroupDecomp -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 86%] Built target testRGroupDecomp
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
[ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/ReactionPickler.cpp
[ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructureFlags.cpp
Scanning dependencies of target testMolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 86%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/testMolHash.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:46:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 86%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp
[ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Utilites.cpp
[ 87%] Linking CXX executable testMolHash
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolHash.dir/testMolHash.cpp.o  -o testMolHash -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 87%] Built target testMolHash
[ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o
[ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/ReactionDepict.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/ReactionWriter.cpp
[ 88%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 88%] Built target rdRGroupDecomposition
[ 89%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Pattern.cpp
[ 89%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 89%] Built target rdMolHash
[ 89%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Stereo.cpp
[ 89%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::Atom3Parity(RDKit::StructureCheck::stereo_bond_t*)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Stereo.cpp:371:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else]
     if (ligands[i].direction != RDKit::Bond::NONE)
        ^
[ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/ReactionUtils.cpp
[ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp
[ 89%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StripSmallFragments.cpp
[ 89%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/ReCharge.cpp
[ 89%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Tautomer.cpp
[ 90%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 90%] Built target rdMolDescriptors
[ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/MoleculeParser.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'bool RDKit::StructureCheck::ChargeFix::setpKaValues()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/ReCharge.cpp:166:24: warning: variable 'AAp' set but not used [-Wunused-but-set-variable]
   const AugmentedAtom *AAp;
                        ^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'int RDKit::StructureCheck::ChargeFix::markMostAcidicAtoms(double&, double&)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/ReCharge.cpp:405:17: warning: unused variable 'atom' [-Wunused-variable]
     const Atom &atom = *Mol.getAtomWithIdx(i);
                 ^~~~
[ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/ReactionRunner.cpp
[ 91%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/PreprocessRxn.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Tautomer.cpp: In member function 'bool RDKit::StructureCheck::StructCheckTautomer::applyTautomer(unsigned int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Tautomer.cpp:61:12: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
     if (-1 == ti || -1 == tj) continue;
         ~~~^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Tautomer.cpp:61:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
     if (-1 == ti || -1 == tj) continue;
                     ~~~^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Tautomer.cpp:36:18: warning: unused variable 'ntb' [-Wunused-variable]
   const unsigned ntb = toTautomer.getNumBonds();
                  ^~~
[ 91%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/SanitizeRxn.cpp
[ 91%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp
[ 92%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2018.03.2 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 92%] Built target StructChecker
[ 92%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp
[ 92%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target testStructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 92%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target rdStructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 92%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap/structchecker.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testLoadOptionsFromFiles()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:139:8: warning: unused variable 'ok' [-Wunused-variable]
   bool ok;
        ^~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testStereo()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:324:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testOptionsDefault()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:400:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtomWithDefaultGoodAtoms()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:424:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtom()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:448:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificExamples()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:603:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
     for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificOrder()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:676:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformTau()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:705:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformAtoms()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:749:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'int main(int, const char**)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:844:14: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, const char* argv[]) {
          ~~~~^~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:844:32: warning: unused parameter 'argv' [-Wunused-parameter]
 int main(int argc, const char* argv[]) {
                    ~~~~~~~~~~~~^~~~~~
[ 93%] Linking CXX executable testStructChecker
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o  -o testStructChecker -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 93%] Built target testStructChecker
[ 93%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2018.03.2 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 93%] Built target ChemReactions
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target testReactionFingerprints
Scanning dependencies of target testEnumeration
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
Scanning dependencies of target rdChemReactions
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Scanning dependencies of target testReaction
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp
Scanning dependencies of target MolDraw2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
[ 93%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/testReaction.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/MolDraw2D.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp:378:8: warning: variable 'doLong' set but not used [-Wunused-but-set-variable]
   bool doLong = false;
        ^~~~~~
[ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 93%] Built target rdStructChecker
[ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp
[ 94%] Linking CXX executable testReactionFingerprints
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o  -o testReactionFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 94%] Built target testReactionFingerprints
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp
[ 94%] Linking CXX executable testEnumeration
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o  -o testEnumeration -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 94%] Built target testEnumeration
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp
[ 95%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp
[ 95%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp
[ 95%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lboost_serialization -lcairo 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 95%] Built target MolDraw2D
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDraw2D
Scanning dependencies of target moldraw2DRxnTest1
Scanning dependencies of target moldraw2DTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 95%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o
[ 95%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o
[ 95%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/rxn_test1.cpp
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolops
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make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 95%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/rdmolops.cpp
[ 96%] Linking CXX executable moldraw2DRxnTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o  -o moldraw2DRxnTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lcairo 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 96%] Built target moldraw2DRxnTest1
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
Scanning dependencies of target rdkit
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 96%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp
[ 97%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/MolOps.cpp
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'double calcSparseStringDiceSml(const char*, unsigned int, const char*, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:982:71: warning: unused parameter 'sza' [-Wunused-parameter]
 extern "C" double calcSparseStringDiceSml(const char *a, unsigned int sza,
                                                          ~~~~~~~~~~~~~^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:983:71: warning: unused parameter 'szb' [-Wunused-parameter]
                                           const char *b, unsigned int szb) {
                                                          ~~~~~~~~~~~~~^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsGT(const char*, unsigned int, int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1095:71: warning: unused parameter 'sza' [-Wunused-parameter]
 extern "C" bool calcSparseStringAllValsGT(const char *a, unsigned int sza,
                                                          ~~~~~~~~~~~~~^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsLT(const char*, unsigned int, int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1133:71: warning: unused parameter 'sza' [-Wunused-parameter]
 extern "C" bool calcSparseStringAllValsLT(const char *a, unsigned int sza,
                                                          ~~~~~~~~~~~~~^~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeAvalonBFP(CROMol, bool, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1434:38: warning: unused parameter 'data' [-Wunused-parameter]
 extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
                               ~~~~~~~^~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1434:49: warning: unused parameter 'isQuery' [-Wunused-parameter]
 extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
                                            ~~~~~^~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1435:44: warning: unused parameter 'bitFlags' [-Wunused-parameter]
                               unsigned int bitFlags) {
                               ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionDifferenceSFP(CChemicalReaction, int, int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1874:21: warning: unused variable 'fp' [-Wunused-variable]
     FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
                     ^~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionBFP(CChemicalReaction, int, int)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1896:21: warning: unused variable 'fp' [-Wunused-variable]
     FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
                     ^~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'char* findMCSsmiles(char*, char*)':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1941:12: warning: unused variable 'nmols' [-Wunused-variable]
   int len, nmols = 0;
            ^~~~~
[ 97%] Linking CXX executable moldraw2DTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DTest1.dir/test1.cpp.o  -o moldraw2DTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lcairo 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 97%] Built target moldraw2DTest1
[ 97%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bfp_op.c
[ 98%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/cache.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/cache.c
[ 98%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/guc.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/guc.c
[ 98%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/low_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/low_gist.c
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/low_gist.c: In function 'gslfp_consistent':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit declaration of function 'searchSfpCache' [-Wimplicit-function-declaration]
   fcinfo->flinfo->fn_extra = searchSfpCache(
                              ^~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment to 'void *' from 'int' makes pointer from integer without a cast [-Wint-conversion]
   fcinfo->flinfo->fn_extra = searchSfpCache(
                            ^
[ 98%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/mol_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:34:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol2s_transition':
/usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:381:18: note: in expansion of macro 'PG_GETARG_DATUM'
     CROMol mol = PG_GETARG_DATUM(1);
                  ^~~~~~~~~~~~~~~
/usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:409:18: note: in expansion of macro 'PG_GETARG_DATUM'
     CROMol mol = PG_GETARG_DATUM(1);
                  ^~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
/usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:477:18: note: in expansion of macro 'PG_GETARG_DATUM'
     CROMol mol = PG_GETARG_DATUM(1);
                  ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:33:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:484:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     PG_RETURN_INT32((int32)lst);
                     ^
/usr/include/pgsql/server/postgres.h:386:39: note: in definition of macro 'SET_4_BYTES'
 #define SET_4_BYTES(value) (((Datum) (value)) & 0xffffffff)
                                       ^~~~~
/usr/include/pgsql/server/fmgr.h:314:36: note: in expansion of macro 'Int32GetDatum'
 #define PG_RETURN_INT32(x)  return Int32GetDatum(x)
                                    ^~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:484:5: note: in expansion of macro 'PG_RETURN_INT32'
     PG_RETURN_INT32((int32)lst);
     ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:34:
/usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:488:18: note: in expansion of macro 'PG_GETARG_DATUM'
     CROMol mol = PG_GETARG_DATUM(1);
                  ^~~~~~~~~~~~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
[ 98%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rdkit_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: implicit declaration of function 'floor' [-Wimplicit-function-declaration]
   return (int) floor(10000*soergeldistsign(a, b));
                ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: incompatible implicit declaration of built-in function 'floor'
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16: note: include '<math.h>' or provide a declaration of 'floor'
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c:42:1:
+#include <math.h>
 
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16:
   return (int) floor(10000*soergeldistsign(a, b));
                ^~~~~
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused variable 'd' [-Wunused-variable]
   double d;
          ^
[ 98%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bfp_gist.c
[ 98%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 99%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_gin.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bfp_gin.c
[ 99%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bitstring.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bitstring.c
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 99%] Built target rdChemReactions
[ 99%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rdkit_io.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_io.c
In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/MolOps.cpp:30:
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
           " returning.");
                        ^
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 99%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rxn_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rxn_op.c
/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment [-Wcomment]
 //  /* keep compiler quiet - no extra ; */                                \
 ^
[ 99%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/sfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/sfp_op.c
[100%] Linking CXX shared library librdkit.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/sql /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/sql
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/data /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/data
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/expected /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/expected
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o  -L/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/lib64 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/lib64:/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib -lpq ../../../lib/libRDKitRDInchiLib.so.1.2018.03.2 -linchi ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 -lboost_serialization -lcairo ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[100%] Built target rdkit
[100%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 -lcairo ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lboost_serialization 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[100%] Built target rdMolDraw2D
[100%] Linking CXX executable testReaction
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReaction.dir/testReaction.cpp.o  -o testReaction -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[100%] Built target testReaction
[100%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 -lcairo ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lboost_serialization 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[100%] Built target rdmolops
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/CMakeFiles 0
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.dFzrE4
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64
++ dirname /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64
+ cd rdkit-Release_2018_03_2
+ pushd python2
~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
+ make install DESTDIR=/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2018_03_2/python2 -B/builddir/build/BUILD/rdkit-Release_2018_03_2/python2 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/CMakeFiles /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  2%] Built target RDGeneral
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/DataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  4%] Built target DataStructs
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  5%] Built target RDGeometryLib
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/GraphMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 10%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 11%] Built target SubstructMatch
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 11%] Built target Depictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 14%] Built target SmilesParse
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/RDInchiLib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 14%] Built target RDInchiLib
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/rdkit/Chem/inchi.py
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 14%] Built target inchi_support
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 15%] Built target EigenSolvers
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 16%] Built target MolTransforms
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 19%] Built target FileParsers
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 19%] Built target Subgraphs
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 20%] Built target PartialCharges
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target Descriptors
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/testInchi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target testInchi
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/RDBoost/CMakeFiles/RDBoost.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target RDBoost
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target rdinchi
make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/CoordGen /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/CoordGen /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'External/CoordGen/CMakeFiles/coordgen_support.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target coordgen_support
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testRDValue.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target testRDValue
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testDict.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target testDict
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 23%] Built target rdBase
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testDataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 24%] Built target testDataStructs
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testFPB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 25%] Built target testFPB
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 25%] Built target testMultiFPB
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 27%] Built target cDataStructs
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 27%] Built target testTransforms
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 27%] Built target testGrid
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target rdGeometry
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/CMakeFiles/testMatrices.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target testMatrices
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target Alignment
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target testAlignment
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target rdAlignment
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target Optimizer
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target testOptimizer
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ForceField/CMakeFiles/ForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 32%] Built target ForceField
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 33%] Built target ForceFieldHelpers
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Built target testUFFForceField
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Built target MolAlign
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 35%] Built target DistGeometry
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 35%] Built target DistGeomHelpers
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 36%] Built target testMMFFForceField
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 36%] Built target rdForceField
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 36%] Built target testDistGeom
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 37%] Built target DistGeom
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Catalogs/CMakeFiles/Catalogs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 38%] Built target Catalogs
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 38%] Built target graphmolMemTest1
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 39%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/test-valgrind.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 40%] Built target test-valgrind
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 40%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 40%] Built target graphmolMolOpsTest
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 41%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 41%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 42%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/molBundleTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 42%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 42%] Built target resMolSupplierTest
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 42%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 43%] Built target graphmolIterTest
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 43%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/hanoiTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 43%] Built target hanoiTest
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Built target ChemTransforms
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Built target testDepictor
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Built target rdDepictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Built target smiTest1
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 45%] Built target cxsmilesTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 46%] Built target smaTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 47%] Built target testSequence
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 47%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 47%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 48%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 48%] Built target testTplParser
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 49%] Built target testMol2ToMol
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 50%] Built target testSubstructMatch
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 51%] Built target FilterCatalog
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 53%] Built target Fingerprints
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 55%] Built target ChemReactions
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 55%] Built target testReaction
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 55%] Built target testEnumeration
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 56%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 56%] Built target rdChemReactions
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 57%] Built target testChemTransforms
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 57%] Built target testSubgraphs1
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 57%] Built target testSubgraphs2
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 57%] Built target filterCatalogTest
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 58%] Built target rdfiltercatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 59%] Built target FragCatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 60%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 61%] Built target rdfragcatalog
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 62%] Built target testDescriptors
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 62%] Built target testAUTOCORR2D
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 63%] Built target rdMolDescriptors
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 63%] Built target testFingerprints
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 64%] Built target testPartialCharges
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 64%] Built target rdPartialCharges
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 64%] Built target testMolTransforms
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Built target rdMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Built target testCrystalForceField
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Built target rdForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target testDistGeomHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target rdDistGeom
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target testMolAlign
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target rdMolAlign
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target MolChemicalFeatures
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target testFeatures
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 68%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 68%] Built target ShapeHelpers
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 68%] Built target testShapeHelpers
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 68%] Built target rdShapeHelpers
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 69%] Built target MolCatalog
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 69%] Built target testMolCatalog
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 69%] Built target rdMolCatalog
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 70%] Built target MolDraw2D
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 70%] Built target moldraw2DTest1
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Built target moldraw2DRxnTest1
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Built target rdMolDraw2D
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Built target FMCS
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Built target testFMCS
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 72%] Built target rdFMCS
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 73%] Built target FMCStest
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 73%] Built target MolHash
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 74%] Built target testMolHash
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 74%] Built target rdMolHash
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Built target MMPA
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Built target testMMPA
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Built target rdMMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 77%] Built target StructChecker
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Built target testStructChecker
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Built target rdStructChecker
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Built target ReducedGraphs
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Built target testReducedGraphs
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Built target rdReducedGraphs
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Built target Trajectory
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target trajectoryTest
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target SubstructLibrary
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target substructLibraryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 82%] Built target rdSubstructLibrary
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 82%] Built target RGroupDecomposition
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 83%] Built target testRGroupDecomp
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 83%] Built target rdRGroupDecomposition
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 84%] Built target SLNParse
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 84%] Built target testSLNParse
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 84%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 85%] Built target rdmolops
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 85%] Built target rdqueries
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 87%] Built target rdchem
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 88%] Built target rdmolfiles
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 89%] Built target rdtrajectory
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 89%] Built target testQuery
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 90%] Built target testMatCalc
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 91%] Built target rdMetricMatrixCalc
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 92%] Built target hc
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Built target SimDivPickers
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Built target testSimDivPickers
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 94%] Built target rdSimDivPickers
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 95%] Built target Clustering
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 95%] Built target InfoTheory
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 96%] Built target rdInfoTheory
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ML/Data/CMakeFiles/cQuantize.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 96%] Built target cQuantize
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 96%] Built target ChemicalFeatures
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 96%] Built target testChemicalFeatures
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 97%] Built target rdChemicalFeatures
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[100%] Built target rdkit
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/cmake/rdkit-targets.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/cmake/rdkit-targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/cmake/rdkit-config.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/cmake/rdkit-config-version.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDConfig.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ForceField
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ForceField/rdForceField.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ForceField/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Makefile
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDRandom.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/cmake_install.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/epydoc.config
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Filter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Output.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Transform.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/demo.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/DbMolSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SDSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Node.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Supply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Dbase
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Dbase/DbConnection.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Dbase/DbInfo.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Dbase/DbResultSet.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Dbase/DbModule.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Dbase/StorageUtils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Dbase/DbUtils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Dbase/DbReport.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Dbase/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/SimilarityPickers.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Neural
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Neural/CrossValidate.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Neural/NetNode.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Neural/Network.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Neural/architecture.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Neural/Trainers.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Neural/ActFuncs.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Neural/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/NaiveBayes
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/NaiveBayes/CrossValidate.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/NaiveBayes/ClassificationModel.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/NaiveBayes/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/DecTree
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/fraggle/atomcontrib.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/fraggle/cxn_tversky.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/fraggle/rdkit_tversky.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/fraggle/data
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/fraggle/data/final_fraggle_results.csv
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/fraggle/data/ChEMBL_11265_actives.smi
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/fraggle/data/fragmentation_tversky_out
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/fraggle/data/query.smi
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/fraggle/data/query_fragmentation.csv
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/fraggle/fraggle.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/SA_Score
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/SA_Score/sascorer.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/SA_Score/README
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/SA_Score/UnitTestSAScore.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/SA_Score/data
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/SA_Score/data/zim.100.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/SA_Score/fpscores.pkl.gz
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/NP_Score
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/NP_Score/npscorer.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/NP_Score/publicnp.model.gz
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/NP_Score/README
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/Glare
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/Glare/README.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/Glare/glare.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/README.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/rfrag.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/create_mmp_db.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/mol_transform.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/search_mmp_db.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/cansmirk.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/indexing.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym.csv
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_fragmented.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs_smarts.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_smiles_mol_trans.smi
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_smirks.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_cansmirks.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/simple.smi
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_transfroms.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_smi_output.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_default.csv
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxheavy.csv
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_smi.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_smart_output.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_smirks_mol_trans.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans_smarts.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_mol_trans_output.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample.smi
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_smarts_output.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_output.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxratio.csv
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym_maxheavy.csv
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_output.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/test_list.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Contrib/mmpa/test_rfrag.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/Makefile
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/cmake_install.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/moe_like.dsc
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/TestDbCLI.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/CreateDb.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/SearchDb.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/testData
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/testData/pubchem.200.sdf
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/testData/bzr.2.smi
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/testData/bzr.smi
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/testData/README
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/testData/bzr_q1.mol
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/testData/bzr.sdf
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/CTestTestfile.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Scripts
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Scripts/PythonFormat.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Scripts/README.md
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Scripts/FeatFinderCLI.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/README
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/license.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDInchiLib.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDInchiLib.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDInchiLib.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDInchiLib.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/inchi.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdinchi.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdinchi.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeneral.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeneral.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeneral.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/Exceptions.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/BadFileException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/BoostStartInclude.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/BoostEndInclude.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/Dict.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/FileParseException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/Invariant.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDAny.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDValue.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDValue-doublemagic.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDValue-taggedunion.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDLog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDProps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDThreads.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/StreamOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/types.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/utils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/versions.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/LocaleSwitcher.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/Ranking.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hanoiSort.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail/hash_float.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail/float_functions.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash/hash.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash/extensions.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash/hash_fwd.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDBoost.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDBoost.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDBoost.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDBoost.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDBoost/Wrap.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDBoost/PySequenceHolder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDBoost/list_indexing_suite.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDBoost/python.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDBoost/boost_numpy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDBoost/python_streambuf.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/rdBase.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/rdBase.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDataStructs.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDataStructs.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDataStructs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDataStructs.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/base64.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/BitOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/BitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/BitVects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/BitVectUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/DatastructsException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/DiscreteDistMat.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/DiscreteValueVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/ExplicitBitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/SparseBitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/SparseIntVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/FPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/MultiFPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataStructs/cDataStructs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataStructs/cDataStructs.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeometryLib.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/Grid3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/GridUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/point.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/Transform2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/Transform3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/Transform.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/UniformGrid3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/Utils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Geometry/rdGeometry.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Geometry/rdGeometry.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/Matrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/SquareMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/SymmMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/Vector.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitAlignment.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitAlignment.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitAlignment.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitAlignment.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/Alignment/AlignPoints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Numerics/rdAlignment.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Numerics/rdAlignment.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitEigenSolvers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitEigenSolvers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitOptimizer.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitOptimizer.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitOptimizer.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitOptimizer.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceField.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceField.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceField.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceField.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/Contrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/ForceField.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/Inversion.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/StretchBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/OopBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ForceField/rdForceField.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ForceField/rdForceField.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeometry.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeometry.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/BoundsMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/ChiralSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/ChiralViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/DistGeomUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/DistViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/FourthDimContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/TriangleSmooth.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/DistanceGeometry/DistGeom.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/DistanceGeometry/DistGeom.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitCatalogs.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitCatalogs.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitCatalogs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitCatalogs.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Catalogs/CatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Catalogs/Catalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Catalogs/CatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitGraphMol.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitGraphMol.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitGraphMol.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitGraphMol.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Atom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/atomic_data.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/AtomIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Bond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/BondIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Chirality.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Conformer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/details.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/GraphMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/PeriodicTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/QueryAtom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/QueryBond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/QueryOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/RDKitBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/RDKitQueries.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Resonance.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/RingInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Rings.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ROMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/RWMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SanitException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MonomerInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/new_canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolBundle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDepictor.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDepictor.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDepictor.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDepictor.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDepictor.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDepictor.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSmilesParse.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSmilesParse.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SmilesParse/primes.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFileParsers.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFileParsers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFileParsers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFileParsers.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolWriters.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/SequenceParsers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/SequenceWriters.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructMatch.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructMatch.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructMatch.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructMatch.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemReactions.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemReactions.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemReactions.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemReactions.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/Reaction.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/Enumerate.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/EnumerateBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/EnumerationPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/EnumerationStrategyBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/CartesianProduct.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/RandomSample.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/RandomSampleAllBBs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemReactions.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemReactions.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemTransforms.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemTransforms.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubgraphs.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubgraphs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFilterCatalog.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFilterCatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfiltercatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfiltercatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFragCatalog.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFragCatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfragcatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfragcatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDescriptors.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDescriptors.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDescriptors.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDescriptors.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/Crippen.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/Lipinski.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/MQN.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/Property.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolDescriptors.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolDescriptors.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFingerprints.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFingerprints.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFingerprints.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFingerprints.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitPartialCharges.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitPartialCharges.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolTransforms.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolTransforms.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceFieldHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeomHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDistGeom.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDistGeom.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolAlign.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolAlign.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolAlign.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolAlign.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolAlign.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolAlign.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitShapeHelpers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitShapeHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdShapeHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdShapeHelpers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolCatalog.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolCatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDrawing/MolDrawing.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DDetails.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolDraw2D.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolDraw2D.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFMCS.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFMCS.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFMCS.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFMCS.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/FMCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/Graph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/Seed.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/SeedSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/MatchTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdFMCS.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdFMCS.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolHash.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolHash.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolHash.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolHash.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolHash/MolHash.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolHash.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolHash.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMMPA.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMMPA.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMMPA.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMMPA.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MMPA/MMPA.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMMPA.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMMPA.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitStructChecker.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitStructChecker.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitStructChecker.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitStructChecker.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/StructChecker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/Utilites.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/Pattern.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/Stereo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/ReCharge.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/Tautomer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdStructChecker.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdStructChecker.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitReducedGraphs.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitReducedGraphs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdReducedGraphs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdReducedGraphs.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitTrajectory.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitTrajectory.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitTrajectory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitTrajectory.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructLibrary.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSubstructLibrary.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSubstructLibrary.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRGroupDecomposition.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSLNParse.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSLNParse.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSLNParse.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSLNParse.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdtrajectory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdtrajectory.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/AndQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/EqualityQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/GreaterEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/GreaterQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/LessEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/LessQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/OrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/Query.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/QueryObjects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/RangeQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/SetQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/XOrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Features/Feature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSimDivPickers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSimDivPickers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/SimDivPickers/DistPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/SimDivPickers/MaxMinPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKithc.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKithc.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKithc.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitInfoTheory.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitInfoTheory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDPaths.py
+ pushd Code/PgSQL/rdkit
~/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
+ install -D librdkit.so /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/pgsql/rdkit.so
+ install -D rdkit.control /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/pgsql/extension/rdkit.control
+ install -D rdkit--3.5.sql /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/pgsql/extension/rdkit--3.5.sql
+ popd
~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
+ popd
~/build/BUILD/rdkit-Release_2018_03_2
+ pushd python3
~/build/BUILD/rdkit-Release_2018_03_2/python3 ~/build/BUILD/rdkit-Release_2018_03_2
+ make install DESTDIR=/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2018_03_2/python3 -B/builddir/build/BUILD/rdkit-Release_2018_03_2/python3 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/CMakeFiles /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  2%] Built target RDGeneral
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/DataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  4%] Built target DataStructs
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  5%] Built target RDGeometryLib
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/GraphMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 10%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 11%] Built target SubstructMatch
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 11%] Built target Depictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 14%] Built target SmilesParse
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/RDInchiLib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 14%] Built target RDInchiLib
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/rdkit/Chem/inchi.py
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 14%] Built target inchi_support
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 15%] Built target EigenSolvers
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 16%] Built target MolTransforms
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 19%] Built target FileParsers
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 19%] Built target Subgraphs
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 20%] Built target PartialCharges
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target Descriptors
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/testInchi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target testInchi
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/RDBoost/CMakeFiles/RDBoost.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target RDBoost
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target rdinchi
make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/CoordGen /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/CoordGen /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'External/CoordGen/CMakeFiles/coordgen_support.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target coordgen_support
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testRDValue.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target testRDValue
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testDict.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target testDict
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 23%] Built target rdBase
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testDataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 24%] Built target testDataStructs
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testFPB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 25%] Built target testFPB
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 25%] Built target testMultiFPB
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 27%] Built target cDataStructs
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 27%] Built target testTransforms
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 27%] Built target testGrid
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target rdGeometry
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/CMakeFiles/testMatrices.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target testMatrices
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target Alignment
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target testAlignment
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target rdAlignment
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target Optimizer
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target testOptimizer
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ForceField/CMakeFiles/ForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 32%] Built target ForceField
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 33%] Built target ForceFieldHelpers
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Built target testUFFForceField
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Built target MolAlign
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 35%] Built target DistGeometry
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 35%] Built target DistGeomHelpers
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Built target testMMFFForceField
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Built target rdForceField
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Built target testDistGeom
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 37%] Built target DistGeom
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Catalogs/CMakeFiles/Catalogs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 38%] Built target Catalogs
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 38%] Built target graphmolMemTest1
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 39%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/test-valgrind.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 40%] Built target test-valgrind
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 40%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 40%] Built target graphmolMolOpsTest
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 42%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/molBundleTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 42%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 42%] Built target resMolSupplierTest
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 42%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Built target graphmolIterTest
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/hanoiTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Built target hanoiTest
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Built target ChemTransforms
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Built target testDepictor
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Built target rdDepictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Built target smiTest1
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 45%] Built target cxsmilesTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 46%] Built target smaTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 47%] Built target testSequence
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 47%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 47%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 48%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 48%] Built target testTplParser
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 49%] Built target testMol2ToMol
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 50%] Built target testSubstructMatch
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 51%] Built target FilterCatalog
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 53%] Built target Fingerprints
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 55%] Built target ChemReactions
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 55%] Built target testReaction
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 55%] Built target testEnumeration
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 56%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 56%] Built target rdChemReactions
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 57%] Built target testChemTransforms
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 57%] Built target testSubgraphs1
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 57%] Built target testSubgraphs2
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 57%] Built target filterCatalogTest
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 58%] Built target rdfiltercatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 59%] Built target FragCatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 60%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 61%] Built target rdfragcatalog
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 62%] Built target testDescriptors
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 62%] Built target testAUTOCORR2D
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Built target rdMolDescriptors
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Built target testFingerprints
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Built target testPartialCharges
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Built target rdPartialCharges
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Built target testMolTransforms
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Built target rdMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Built target testCrystalForceField
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Built target rdForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 66%] Built target testDistGeomHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 66%] Built target rdDistGeom
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 66%] Built target testMolAlign
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 66%] Built target rdMolAlign
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target MolChemicalFeatures
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target testFeatures
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 68%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 68%] Built target ShapeHelpers
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 68%] Built target testShapeHelpers
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 68%] Built target rdShapeHelpers
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 69%] Built target MolCatalog
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 69%] Built target testMolCatalog
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 69%] Built target rdMolCatalog
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Built target MolDraw2D
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Built target moldraw2DTest1
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target moldraw2DRxnTest1
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target rdMolDraw2D
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target FMCS
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target testFMCS
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 72%] Built target rdFMCS
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 73%] Built target FMCStest
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 73%] Built target MolHash
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 74%] Built target testMolHash
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 74%] Built target rdMolHash
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 75%] Built target MMPA
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 75%] Built target testMMPA
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 75%] Built target rdMMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 77%] Built target StructChecker
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Built target testStructChecker
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Built target rdStructChecker
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Built target ReducedGraphs
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Built target testReducedGraphs
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 80%] Built target rdReducedGraphs
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 80%] Built target Trajectory
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target trajectoryTest
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target SubstructLibrary
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target substructLibraryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 82%] Built target rdSubstructLibrary
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 82%] Built target RGroupDecomposition
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Built target testRGroupDecomp
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Built target rdRGroupDecomposition
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Built target SLNParse
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Built target testSLNParse
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 85%] Built target rdmolops
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 85%] Built target rdqueries
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 87%] Built target rdchem
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 88%] Built target rdmolfiles
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 89%] Built target rdtrajectory
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 89%] Built target testQuery
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 90%] Built target testMatCalc
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 91%] Built target rdMetricMatrixCalc
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 92%] Built target hc
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 93%] Built target SimDivPickers
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 93%] Built target testSimDivPickers
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 94%] Built target rdSimDivPickers
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 95%] Built target Clustering
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 95%] Built target InfoTheory
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 96%] Built target rdInfoTheory
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ML/Data/CMakeFiles/cQuantize.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 96%] Built target cQuantize
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 96%] Built target ChemicalFeatures
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 96%] Built target testChemicalFeatures
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 97%] Built target rdChemicalFeatures
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[100%] Built target rdkit
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "RelWithDebInfo"
-- Old export file "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/cmake/rdkit-targets.cmake" will be replaced.  Removing files [/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/cmake/rdkit-targets-relwithdebinfo.cmake].
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/cmake/rdkit-targets.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/cmake/rdkit-targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/cmake/rdkit-config.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/cmake/rdkit-config-version.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/RDConfig.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/ForceField
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/ForceField/rdForceField.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/ForceField/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Makefile
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-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/testData/bzr_q1.mol
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/testData/bzr.sdf
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/DbCLI/TestDbCLI.py.orig
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Projects/CTestTestfile.cmake
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Scripts
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Scripts/PythonFormat.py
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Scripts/README.md
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/Scripts/FeatFinderCLI.py
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/README
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/RDKit/license.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDInchiLib.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDInchiLib.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDInchiLib.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDInchiLib.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/inchi.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdinchi.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdinchi.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeneral.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeneral.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeneral.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/Exceptions.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/BadFileException.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/BoostStartInclude.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/BoostEndInclude.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/Dict.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/FileParseException.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/Invariant.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDAny.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDValue.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDValue-doublemagic.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDValue-taggedunion.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDLog.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDProps.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/RDThreads.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/StreamOps.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/types.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/utils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/versions.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/LocaleSwitcher.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/Ranking.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hanoiSort.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail/hash_float.hpp
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail/float_functions.hpp
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash/hash.hpp
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash/extensions.hpp
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDGeneral/hash/hash/hash_fwd.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDBoost.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDBoost.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDBoost.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDBoost.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDBoost/Wrap.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDBoost/PySequenceHolder.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDBoost/list_indexing_suite.hpp
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDBoost/python.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDBoost/boost_numpy.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/RDBoost/python_streambuf.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/rdBase.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/rdBase.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDataStructs.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDataStructs.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDataStructs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDataStructs.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/base64.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/BitOps.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/BitVect.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/BitVects.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/BitVectUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/DatastructsException.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/DiscreteDistMat.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/DiscreteValueVect.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/ExplicitBitVect.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/SparseBitVect.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/SparseIntVect.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/FPBReader.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataStructs/MultiFPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/DataStructs/cDataStructs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/DataStructs/cDataStructs.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeometryLib.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/Grid3D.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/GridUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/point.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/Transform2D.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/Transform3D.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/Transform.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/UniformGrid3D.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Geometry/Utils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Geometry/rdGeometry.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Geometry/rdGeometry.so" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/Matrix.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/SquareMatrix.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/SymmMatrix.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/Vector.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitAlignment.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitAlignment.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitAlignment.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitAlignment.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/Alignment/AlignPoints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Numerics/rdAlignment.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Numerics/rdAlignment.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitEigenSolvers.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitEigenSolvers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitOptimizer.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitOptimizer.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitOptimizer.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitOptimizer.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceField.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceField.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceField.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceField.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/Contrib.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/ForceField.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/AngleBend.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/BondStretch.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/Contribs.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/AngleConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/PositionConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/Nonbonded.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/Params.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/Inversion.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/UFF/TorsionAngle.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/AngleBend.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/BondStretch.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/StretchBend.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/OopBend.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/Nonbonded.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/Contribs.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ForceField/MMFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/ForceField/rdForceField.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/ForceField/rdForceField.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeometry.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeometry.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/BoundsMatrix.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/ChiralSet.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/ChiralViolationContrib.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/DistGeomUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/DistViolationContrib.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/FourthDimContrib.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DistGeom/TriangleSmooth.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/DistanceGeometry/DistGeom.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/DistanceGeometry/DistGeom.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitCatalogs.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitCatalogs.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitCatalogs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitCatalogs.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Catalogs/CatalogEntry.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Catalogs/Catalog.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Catalogs/CatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitGraphMol.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitGraphMol.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitGraphMol.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitGraphMol.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Atom.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/atomic_data.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/AtomIterators.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Bond.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/BondIterators.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Canon.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Chirality.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Conformer.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/details.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/GraphMol.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolOps.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolPickler.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/PeriodicTable.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/QueryAtom.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/QueryBond.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/QueryOps.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/RDKitBase.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/RDKitQueries.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Resonance.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/RingInfo.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Rings.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ROMol.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/RWMol.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SanitException.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MonomerInfo.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/new_canon.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolBundle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDepictor.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDepictor.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDepictor.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDepictor.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDepictor.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDepictor.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSmilesParse.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSmilesParse.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SmilesParse/primes.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFileParsers.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFileParsers.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFileParsers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFileParsers.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolWriters.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/SequenceParsers.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FileParsers/SequenceWriters.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructMatch.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructMatch.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructMatch.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructMatch.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemReactions.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemReactions.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemReactions.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemReactions.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/Reaction.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/Enumerate.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/EnumerateBase.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/EnumerationPickler.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/EnumerationStrategyBase.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/CartesianProduct.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/RandomSample.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemReactions/RandomSampleAllBBs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemReactions.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemReactions.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemTransforms.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemTransforms.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubgraphs.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubgraphs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFilterCatalog.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFilterCatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdfiltercatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdfiltercatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFragCatalog.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFragCatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdfragcatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdfragcatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDescriptors.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDescriptors.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDescriptors.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDescriptors.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/Crippen.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/Lipinski.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/MQN.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/Property.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolDescriptors.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolDescriptors.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFingerprints.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFingerprints.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFingerprints.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFingerprints.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitPartialCharges.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitPartialCharges.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdPartialCharges.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdPartialCharges.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolTransforms.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolTransforms.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolTransforms.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolTransforms.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceFieldHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeomHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDistGeom.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDistGeom.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolAlign.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolAlign.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolAlign.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolAlign.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolAlign.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolAlign.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitShapeHelpers.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitShapeHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdShapeHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdShapeHelpers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolCatalog.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolCatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolCatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolCatalog.so" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToCairo.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToSVG.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDrawing/MolDrawing.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DDetails.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolDraw2D.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolDraw2D.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFMCS.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFMCS.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFMCS.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFMCS.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/FMCS.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/Graph.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/Seed.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/SeedSet.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/MatchTable.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdFMCS.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdFMCS.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolHash.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolHash.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolHash.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMolHash.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MolHash/MolHash.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolHash.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolHash.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMMPA.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMMPA.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMMPA.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitMMPA.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/MMPA/MMPA.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMMPA.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMMPA.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitStructChecker.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitStructChecker.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitStructChecker.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitStructChecker.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/StructChecker.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/Utilites.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/Pattern.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/Stereo.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/ReCharge.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/StructChecker/Tautomer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdStructChecker.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdStructChecker.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitReducedGraphs.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitReducedGraphs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdReducedGraphs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdReducedGraphs.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitTrajectory.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitTrajectory.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitTrajectory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitTrajectory.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructLibrary.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSubstructLibrary.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSubstructLibrary.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRGroupDecomposition.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSLNParse.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSLNParse.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSLNParse.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSLNParse.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSLNParse.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSLNParse.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdchem.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdchem.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolops.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolops.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdqueries.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdqueries.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolfiles.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolfiles.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdtrajectory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdtrajectory.so" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/AndQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/EqualityQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/GreaterEqualQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/GreaterQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/LessEqualQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/LessQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/OrQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/Query.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/QueryObjects.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/RangeQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/SetQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Query/XOrQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/Features/Feature.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSimDivPickers.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSimDivPickers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/SimDivPickers/DistPicker.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/SimDivPickers/MaxMinPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKithc.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKithc.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKithc.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/ML/Cluster/Clustering.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/ML/Cluster/Clustering.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitInfoTheory.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitInfoTheory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/ML/Data/cQuantize.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/ML/Data/cQuantize.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemicalFeatures.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemicalFeatures.so" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/RDPaths.py
+ popd
~/build/BUILD/rdkit-Release_2018_03_2
+ rm -r /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64//usr/share/RDKit
+ FMCS=/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs
+ sed '1{\@^#!/usr/bin/python2@d}' /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ touch -r /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.new
+ mv /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.new /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ rm /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs
+ FMCS=/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs
+ sed '1{\@^#!/usr/bin/python3@d}' /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ touch -r /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.py /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.new
+ mv /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.new /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ rm /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs
+ /usr/lib/rpm/find-debuginfo.sh -j6 --strict-build-id -m -i --build-id-seed 2018.03.2-1.fc29 --unique-debug-suffix -2018.03.2-1.fc29.x86_64 --unique-debug-src-base rdkit-2018.03.2-1.fc29.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/rdkit-Release_2018_03_2
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitFingerprints.so.1.2018.03.2
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2018.03.2
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2018.03.2
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2018.03.2
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/pgsql/rdkit.so
/usr/lib/rpm/sepdebugcrcfix: Updated 126 CRC32s, 0 CRC32s did match.
17163 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
/sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib/debug/usr/lib64/python3.7 using /usr/bin/python3.7
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python3.7 using /usr/bin/python3.7
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/lib64/python2.7 using /usr/bin/python2.7
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/share/pgsql/extension/rdkit.control is executable but has empty or no shebang, removing executable bit
*** WARNING: ./usr/share/pgsql/extension/rdkit--3.5.sql is executable but has empty or no shebang, removing executable bit
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.rfMwh3
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_2
+ exit 0
Processing files: rdkit-2018.03.2-1.fc29.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.A5FkV1
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_2
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/doc/rdkit
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/doc/rdkit
+ cp -pr ReleaseNotes.md /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/doc/rdkit
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.wZrhA0
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_2
+ LICENSEDIR=/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/licenses/rdkit
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/licenses/rdkit
+ cp -pr license.txt /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/licenses/rdkit
+ exit 0
Provides: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) rdkit = 2018.03.2-1.fc29 rdkit(x86-64) = 2018.03.2-1.fc29
Requires(interp): /sbin/ldconfig /sbin/ldconfig
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(post): /sbin/ldconfig
Requires(postun): /sbin/ldconfig
Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python3.so.1.66.0()(64bit) libboost_serialization.so.1.66.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython3.7m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: rdkit-devel-2018.03.2-1.fc29.x86_64
Provides: rdkit-devel = 2018.03.2-1.fc29 rdkit-devel(x86-64) = 2018.03.2-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit)
Processing files: rdkit-doc-2018.03.2-1.fc29.noarch
Processing files: python2-rdkit-2018.03.2-1.fc29.x86_64
Provides: python-rdkit = 2018.03.2-1.fc29 python2-rdkit = 2018.03.2-1.fc29 python2-rdkit(x86-64) = 2018.03.2-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python.so.1.66.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 2.7 rtld(GNU_HASH)
Obsoletes: python-rdkit < 2018.03.2-1.fc29
Processing files: python3-rdkit-2018.03.2-1.fc29.x86_64
Provides: python3-rdkit = 2018.03.2-1.fc29 python3-rdkit(x86-64) = 2018.03.2-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python3.so.1.66.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython3.7m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.7 rtld(GNU_HASH)
Processing files: rdkit-postgresql-2018.03.2-1.fc29.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.vrnb7Y
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_2
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/doc/rdkit-postgresql
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/doc/rdkit-postgresql
+ cp -pr python2/Code/PgSQL/rdkit/README /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64/usr/share/doc/rdkit-postgresql
+ exit 0
Provides: librdkit.so()(64bit) rdkit-postgresql = 2018.03.2-1.fc29 rdkit-postgresql(x86-64) = 2018.03.2-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: rdkit-debugsource-2018.03.2-1.fc29.x86_64
Provides: rdkit-debugsource = 2018.03.2-1.fc29 rdkit-debugsource(x86-64) = 2018.03.2-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: rdkit-debuginfo-2018.03.2-1.fc29.x86_64
Provides: debuginfo(build-id) = 00a652db5644431e43e3b745d50aff6612fcff5e debuginfo(build-id) = 00b2fade87644ac3f69a1805f4af1a912c247eaf debuginfo(build-id) = 037cbbd0a8cc527093ebb9739fec107df77b5b2f debuginfo(build-id) = 0c05a0487cb6f287774e32a90a2771fc6c0e1a14 debuginfo(build-id) = 111393e420f84ab11dec7028f171489928382c30 debuginfo(build-id) = 1a410e49e8b7804735735c80fc542f7cdec0454a debuginfo(build-id) = 21e1ac4d5afa1752ef68139a33262e24a30cf8b2 debuginfo(build-id) = 409f992184c4f751afd0c10e75acdad3436d9c75 debuginfo(build-id) = 46f933789d1a336385f7c1690d3db05b027d135e debuginfo(build-id) = 49aca004fa966e6369ffd4fdc1bf631b88618d97 debuginfo(build-id) = 4abd4f1720cec12e76d055abaea892781d3c76ec debuginfo(build-id) = 5c6be46004be52c88dfcc18a66860f55de24bcf0 debuginfo(build-id) = 5cf6416fcba00d012acb6578563ba366efe87751 debuginfo(build-id) = 5d8081d47beb6d0bd0c896ed6dec2eeeee4e5197 debuginfo(build-id) = 5f694e426200f57df51bc19b4ebecd615f4dc794 debuginfo(build-id) = 62a688c532c566a2bbd2f15eeb3bc0aea4408657 debuginfo(build-id) = 6367f20c9100c9e05b2ddc3080534277a481c402 debuginfo(build-id) = 695384b60d6f9ccc135588cc28df21e26ea9452c debuginfo(build-id) = 6bd86db1b3f8e8503076696f03b4a71fb2d0a23b debuginfo(build-id) = 6ceed64b06e45c59aea25d6d09b879e2d70a0bb7 debuginfo(build-id) = 6ee4134e73b29818344017aac27503c49ac7c1bc debuginfo(build-id) = 6f502284a8a62a9dbcc843314fda64c276777023 debuginfo(build-id) = 83bb8a448fbea90e583b802546d449fca5006231 debuginfo(build-id) = 85bd11dd434ab67151eed088642b17442a6ce95b debuginfo(build-id) = 860cc0dc01b141fc42e4946f7cd518631d5e7efc debuginfo(build-id) = 86653695a4d1696823f692f783b54fdd52fa2073 debuginfo(build-id) = 874b109cc69e93b79b1c19c96ce0e98e4f6ffb6c debuginfo(build-id) = 8ca051050574fb69ffa27f266f0380f3ff623bde debuginfo(build-id) = 9150dfea1f79604486674208f1d86d725faaf397 debuginfo(build-id) = 9fb32774f44f12a08afed77c3b157d9c089250fd debuginfo(build-id) = ae1af871ad92f99269b7ee4ae862511333440dee debuginfo(build-id) = ae7ff77df73de82ecb6b744d09f50310ab1f060f debuginfo(build-id) = c61bf0fabded5abf4b1cdca69e1792bd6a99b910 debuginfo(build-id) = c7704bc847c34908107d5cba5d8f8337be7d4fb7 debuginfo(build-id) = cbf6d11327a4c05029d6b6ea78eb2c543e426e54 debuginfo(build-id) = d0cba6d0067e71d267d2e53ea858ad083b0e567f debuginfo(build-id) = dbc13e3d1b0cd20feb9ea1358d1cf7e6cb06df58 debuginfo(build-id) = dbe6a9230d86e73c76488c268615a39013f126c8 debuginfo(build-id) = df43cb9a9c0bc8d8f184b06e3d05b39a0bad1d17 debuginfo(build-id) = e405d8a899d26cead1b7c4a3a037614d4ddffc1c debuginfo(build-id) = ed41a31305294455a0a838d3c4480641e4ce2cf6 debuginfo(build-id) = f1bc796de63b762e0f980ececf5f5ab535e4cf1d debuginfo(build-id) = f710abbba9405e8d9e2c49cef6671a3191801ab8 debuginfo(build-id) = f7eca6bcd3deef3c50f376af7d1d467210f8b252 debuginfo(build-id) = fd50bc187979f7e93b558121c80eae719a13b640 rdkit-debuginfo = 2018.03.2-1.fc29 rdkit-debuginfo(x86-64) = 2018.03.2-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(x86-64) = 2018.03.2-1.fc29
Processing files: python2-rdkit-debuginfo-2018.03.2-1.fc29.x86_64
Provides: debuginfo(build-id) = 14c712c94fcb930ca6d31557b9c662178152b4a2 debuginfo(build-id) = 19e90d71521f86604cf2c70bdbddac592621159d debuginfo(build-id) = 1faef819f40de4554729114fb15407de2e0616d3 debuginfo(build-id) = 3050a27a4c615d587631f8987900893d9e827e35 debuginfo(build-id) = 349b7484ce125b8cf5e5f43eb7c7c5e14bf831ff debuginfo(build-id) = 372bcad2c3218e0a2feff8211cd5cc03d5a5d37c debuginfo(build-id) = 436e7433f2d7bb112bfbcf5a242f6957ce280286 debuginfo(build-id) = 51077d9ba1561d5ea3359cbb4368a2598f0968cd debuginfo(build-id) = 575dba68868ae8b2e9519939037739525b6f0cf0 debuginfo(build-id) = 5770b7fadf0189e7fa474652f0ba8c3999e4daa8 debuginfo(build-id) = 5ef7984b86a1c5c8f058f34c118fbfcb7951ab75 debuginfo(build-id) = 69a86fd60f7a2ecc777c24f42dbd796a211b1e3d debuginfo(build-id) = 6f08bf9f2c16067dbe3d815e8c48263c40841503 debuginfo(build-id) = 78ffc4dadb55fc3108fd62b57cd1ef68daea5b27 debuginfo(build-id) = 7cb96219295bcde5a0d7260efdf0eec056a64f6e debuginfo(build-id) = 82cbe8182992c06066fc35d1c22d3aa63058f084 debuginfo(build-id) = 85e561a0e4cc9c8ae9be42833a21d294f74a459e debuginfo(build-id) = 8caac065955acae74ab0864870cc275a47359b29 debuginfo(build-id) = 9dcd4961bb5e23cd5976ec552343b20ace496812 debuginfo(build-id) = 9e155dc91163822f4ea6332e3023f9fbc5ac0e88 debuginfo(build-id) = a3340e06d1ea33f930126df8c9cdc7652f25af96 debuginfo(build-id) = a50d73e46f4b8c56861407b516baf39f0696e3d0 debuginfo(build-id) = a7bc1a0753e7c4489565a7b15351c2a9214426fa debuginfo(build-id) = ad242ea9ba0b15cd34ad459587a0b8c2de854ff0 debuginfo(build-id) = ad4a3586791e3be7fc7f755eec3d18ddf656447e debuginfo(build-id) = b4ed12816e12f9b6ccdb4b43450eb8c2e0b0d916 debuginfo(build-id) = bba9bfb8cd80e5748eb96ca4f3eb15d4c021fb8d debuginfo(build-id) = c0f03673277442338333d8d1686c477b357baee7 debuginfo(build-id) = c72bab33dff65709a8ad0ca3df5de28886f656b3 debuginfo(build-id) = cef3cd27617011a2f181a0900612d3de83923e32 debuginfo(build-id) = d332e2fe5c4bcaa0f82077053467f6c77d9a0c01 debuginfo(build-id) = d59207ba27d433191093dea9ab6cb012c182871b debuginfo(build-id) = d9937651d794410aca7ed4e9d3c49f53fe4662cf debuginfo(build-id) = dd1160e9c952523039dcbc445dd32038abb33af0 debuginfo(build-id) = dd6170e22d77f5779d9ad43ab0085cddad41cb53 debuginfo(build-id) = e0264b1ff87eee6c17860269ad1767c3a57d2e86 debuginfo(build-id) = ecf4803279c78b90073b0b26af4b72fc20058f16 debuginfo(build-id) = ecfbaa69e4f932b1ff4e2c4d452bebc4a4ab9dce debuginfo(build-id) = fc0efac98b1152ad710e57df9cf47f57d9686c04 debuginfo(build-id) = fc26746788109bd4fae5f0e74c0c41f028df7b9f python2-rdkit-debuginfo = 2018.03.2-1.fc29 python2-rdkit-debuginfo(x86-64) = 2018.03.2-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(x86-64) = 2018.03.2-1.fc29
Processing files: python3-rdkit-debuginfo-2018.03.2-1.fc29.x86_64
Provides: debuginfo(build-id) = 00a37c3215e892e617ae6aa166b6558d08346807 debuginfo(build-id) = 0286b59618a5a7150112fa6e62b220f713bcf099 debuginfo(build-id) = 0d9f5a2f2098f71f358d19e516858a7c001497c7 debuginfo(build-id) = 0ed3902d7d932bed7e10cb868d9daa9fe72c9210 debuginfo(build-id) = 19ef03e1939f60b9dc2f8d8e442262e215ea115c debuginfo(build-id) = 1cef82ee51a4e2966717c77a1172be9285c6ac5b debuginfo(build-id) = 2a181769ade6d5182880cca8609c37d4ffe91481 debuginfo(build-id) = 2a5335f05b221773e97904b686db7d4e69a01cc8 debuginfo(build-id) = 33a03fbc9bc5028fb5663a8ff5f7b8f5b2aa81bd debuginfo(build-id) = 36810d9809204932b04d57715d6e48515e36401b debuginfo(build-id) = 36cb192be0ccfdf843cbeb10070383df4b01a5a7 debuginfo(build-id) = 40672e184d52a1bff2a3ad3b166557327ad15eb8 debuginfo(build-id) = 43586b02f336e67253cf022586036b98cc6e5806 debuginfo(build-id) = 4da1f3f08febfa92f420f1c8695f9bde404a4fae debuginfo(build-id) = 5b729916bb17361d882435c2e9c37cac12d60f4d debuginfo(build-id) = 66a9238d1405c4a161abda1667547ede6c5cc4dd debuginfo(build-id) = 69a51d4000cc9b1bece56a9410553017711f8a89 debuginfo(build-id) = 7b6181b6a3b94f9bc87aedd78867039f0f0a3572 debuginfo(build-id) = 7d2a1ad0fcb69f571ee3681b6f231431e51f85a7 debuginfo(build-id) = 839562175375246dcb438587f0d79289a37a9543 debuginfo(build-id) = 864637e503e6ab96b25debdd01fb2e74c88d6ffc debuginfo(build-id) = 90c9d533284998ae538cdd624b9f6fd779b824f4 debuginfo(build-id) = 940dad37877e063cf5ff294518763bae27c6dd47 debuginfo(build-id) = 981ecdce68e2c22e1f8c5ae8c4f828a6d0967ca8 debuginfo(build-id) = 9a73f7d7c686fdb12cd2997237a098fab8adfab2 debuginfo(build-id) = 9cdaa7a49b4e0f641651caba5aa3155457b24f6a debuginfo(build-id) = a7dba5e8cd37505a2f0fa802f7b4ed3dd89b0f38 debuginfo(build-id) = b81dc9d889aa67d571227eaa2682fa60f9c2d815 debuginfo(build-id) = bc6075001c3376ce37c4bf540ada59fedac27a63 debuginfo(build-id) = bf86e1b14fd557f907ae286749c9f666db683ad5 debuginfo(build-id) = d7cb7284783c701cccbe6cfe3ba7af537a2561f9 debuginfo(build-id) = df41b547267309ce6e8e982536f37a3a3b1b9a58 debuginfo(build-id) = dff784fe1dc3eb134ea671eb486d7aad434464a2 debuginfo(build-id) = e400a23bdf75bd5bb363986f4f941c7f89812c15 debuginfo(build-id) = e53e2035086ff77ae08436552b92d60efe9151e1 debuginfo(build-id) = e550a0e3a5016a0360beb65f9e862b2405eba76c debuginfo(build-id) = eb9fbd83da7668160994ee0fd2b54aa4b5131cfd debuginfo(build-id) = f7431913716e573b5abfcc28889b851418afed41 debuginfo(build-id) = fb8d7c5940bdc355acc031ddf75967b669a87ae8 debuginfo(build-id) = fe760287f265c02109d7adaea9281c20b25098f3 python3-rdkit-debuginfo = 2018.03.2-1.fc29 python3-rdkit-debuginfo(x86-64) = 2018.03.2-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(x86-64) = 2018.03.2-1.fc29
Processing files: rdkit-postgresql-debuginfo-2018.03.2-1.fc29.x86_64
Provides: debuginfo(build-id) = 29e4f26cdfc2390856de1d8a0f6e972969a2e93d rdkit-postgresql-debuginfo = 2018.03.2-1.fc29 rdkit-postgresql-debuginfo(x86-64) = 2018.03.2-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(x86-64) = 2018.03.2-1.fc29
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64
Wrote: /builddir/build/RPMS/rdkit-2018.03.2-1.fc29.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-devel-2018.03.2-1.fc29.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-doc-2018.03.2-1.fc29.noarch.rpm
Wrote: /builddir/build/RPMS/python2-rdkit-2018.03.2-1.fc29.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-rdkit-2018.03.2-1.fc29.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-postgresql-2018.03.2-1.fc29.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-debugsource-2018.03.2-1.fc29.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-debuginfo-2018.03.2-1.fc29.x86_64.rpm
Wrote: /builddir/build/RPMS/python2-rdkit-debuginfo-2018.03.2-1.fc29.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-rdkit-debuginfo-2018.03.2-1.fc29.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-postgresql-debuginfo-2018.03.2-1.fc29.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.07NjlQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_2
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/rdkit-2018.03.2-1.fc29.x86_64
+ exit 0
Child return code was: 0